Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2856 ATGTCGTTAATCAGGACATCCGATCCATCTCCGTTATCGTATGGAAGTCGGCAGCTGTACTCATTGAAGGGAACCAAGAATGCTCCTGATATGTCCACCCAAAGATTTAGCTCTGAAAAGCATAGGATGATGTATATGGATGATTCATATTGTGAGAGCTATGAGAAGTATTTCCTCGACTTTCCAATAGAAGAGCTATCGATTTCTGGCATTTCTACCAATTCTTTTCACCCCAATGCTGGTTCATGTGGCGTAAGGGCTGATTCTCTATCTCCTTTGTGTGATTCACTTACACTTTTTGATGCTTATCAATCAAATTCGGACTCGACTTGCCTCGAGAGTACAAGTCCAGAACAGCTGGATTTTGAGGATGATCAAATGAAACGGAAGTTGCAAGAATTGGAGAGAGATCTGCTGGGTGAACCGGATGCTGCTGATTATAATCACGAGATGTTTGCGAATGGCCAGAGCATGGAAATTGATAGTGAATGGTTGCTTCACGACTCGCCAAAGGAATCATCATCTTCAGATTCTAATTTCAGTACTGTCAGCAGCAGTAAGGATGCATCTCAGACATCTTCACAGAATCCCAGACAAATGCTTTTAGAATGTGCTTCTGCTATCTCGGAAGAGAACTTTGAAGAAGCATCAGTCATGATAGAACAGCTCCGACGTATAGTCTCGGTCCAGGGAGATCCCTCACAGAGGATTGCAGCATATATGGTGGAAGGTCTTGCTGCTCGATTGTTCGAATCAGGAAAATGTCTTTACAAAGCTTTGAGATGCAAAGAACCTCCATCCTCCGACCGTCTCGCAGCTATGCAGATCCTTTTCGAGGTCTGCCCCTGTTTTAAATTTGGCTTTATGGCTGCAAATTGTGCTATTATTGAGGCAGCGAAAGATGAAAAGAGAATTCACATAATCGATTTTGATGTAAGCCAAGGAACTCAGTACATTAAACTGATTCAGATGCTAGCAGCTCAGCCAGGTAAGCCACCACATTTGAGGTTAACTGGTGTAGACGACCCTGAATCGGTACAGCGCCCTGTTGGAGGTCTTAGACACATCGGACAAAGGCTCGAGCAGCTAGCAAAAGCACTGAATGTTTCATTCCAATTTCGCGCGATTGCATCAAATGCCTTAGATGTCAGCCCCTCCATGCTCACCTCCAGGCCTGGAGAAGCACTCATAGTAAACTTTGCTTTTCTGCTTCACCACATGCCAGATGAAAGCGTTTCAACTGTAAATCTACGAGACAGGCTTCTCCGAATGGTTAAGAGCCTGAAGCCAAAACTGGTAACAGTCGTCGAACAGGACATGAATGCAAATACCACCCCATTCTTTTCAAGATTCGTCGAAACCTATAACTACTACGCTGCAGTTTACGACACTCTTGATGCAACACTTCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGGCAGTGCTTGGCAAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGACAGGGTGGAGAGGTATGAAGTTGCTGGGAAATGGCGGGCAAGAATGACGATGGCTGGCTTCACTTCATGTTCGATGAGCCAAAACGTTACCGACCCGATCCGGAAACTTGTTGAGGAGTATTGTGACAGGTTCAAGATGTATGAGGAAATGGGCACACTACATTTTGGATGGGAAGAGAAAAGCTTGATAGTGACTTCAGTGTGGAGGTAA 1704 44.37 MSLIRTSDPSPLSYGSRQLYSLKGTKNAPDMSTQRFSSEKHRMMYMDDSYCESYEKYFLDFPIEELSISGISTNSFHPNAGSCGVRADSLSPLCDSLTLFDAYQSNSDSTCLESTSPEQLDFEDDQMKRKLQELERDLLGEPDAADYNHEMFANGQSMEIDSEWLLHDSPKESSSSDSNFSTVSSSKDASQTSSQNPRQMLLECASAISEENFEEASVMIEQLRRIVSVQGDPSQRIAAYMVEGLAARLFESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKRIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVQRPVGGLRHIGQRLEQLAKALNVSFQFRAIASNALDVSPSMLTSRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLKPKLVTVVEQDMNANTTPFFSRFVETYNYYAAVYDTLDATLPRDSQDRINVERQCLAKDIVNIVACEGEDRVERYEVAGKWRARMTMAGFTSCSMSQNVTDPIRKLVEEYCDRFKMYEEMGTLHFGWEEKSLIVTSVWR 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43319462 43322608 - Sed0023397.1 Sed07g2856 721720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2856 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 184 566 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed07g2856 567 Pfam GRAS domain family 198 567 IPR005202 -
Sed07g2856 567 MobiDBLite consensus disorder prediction 168 197 - -
Sed07g2856 567 MobiDBLite consensus disorder prediction 171 197 - -
Sed07g2856 567 ProSiteProfiles GRAS family profile. 188 567 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3560 Sed-Chr1:64805173 Sed07g2856 Sed-Chr7:43319462 3.30E-63 dispersed
Sed05g2984 Sed-Chr5:40472508 Sed07g2856 Sed-Chr7:43319462 6.10E-57 dispersed
Sed07g2856 Sed-Chr7:43319462 Sed07g2858 Sed-Chr7:43319462 0.00E+00 dispersed
Sed07g2856 Sed-Chr7:43319462 Sed07g2857 Sed-Chr7:43319462 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39217 PF03514 GRAS 3.20E-130 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2856 K27748 - csv:101206511 986.097