Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2858 ATGTCGTTAATCAGGACATCCGATCCATCTCCGTTATCGTATGGAAGTCGGCAGCTGTACTCATTGAAGGGAACCAAGAATGCTCCTGATATGTCCACCCAAAGATTTAGCTCTGAAAAGCATAGGATGATGTATATGGATGATTCATATTGTGAGAGCTATGAGAAGTATTTCCTCGACTTTCCAATAGAAGAGCTATCGATTTCTGGCATTTCTACCAATTCTTTTCACCCCAATGCTGGTTCATGTGGCGTAAGGGCTGATTCTCTATCTCCTTTGTGTGATTCACTTACACTTTTTGATGCTTATCAATCAAATTCGGACTCGACTTGCCTCGAGAGTACAAGTCCAGAACAGCTGGATTTTGAGGATGATCAAATGAAACGGAAGTTGCAAGAATTGGAGAGAGATCTGCTGGGTGAACCGGATGCTGCTGATTATAATCACGAGATGTTTGCGAATGGCCAGAGCATGGAAATTGATAGTGAATGGTTGCTTCACGACTCGCCAAAGGAATCATCATCTTCAGATTCTAATTTCAGTACTGTCAGCAGCAGTAAGGATGCATCTCAGACATCTTCACAGAATCCCAGACAAATGCTTTTAGAATGTGCTTCTGCTATCTCGGAAGAGAACTTTGAAGAAGCATCAGTCATGATAGAACAGCTCCGACGTATAGTCTCGGTCCAGGGAGATCCCTCACAGAGGATTGCAGCATATATGGTGGAAGGTCTTGCTGCTCGATTGTTCGAATCAGGAAAATGTCTTTACAAAGCTTTGAGATGCAAAGAACCTCCATCCTCCGACCGTCTCGCAGCTATGCAGATCCTTTTCGAGGTCTGCCCCTGTTTTAAATTTGGCTTTATGGCTGCAAATTGTGCTATTATTGAGGCAGCGAAAGATGAAAAGAGAATTCACATAATCGATTTTGATGTAAGCCAAGGAACTCAGTACATTAAACTGATTCAGATGCTAGCAGCTCAGCCAGGTAAGCCACCACATTTGAGGTTAACTGGTGTAGACGACCCTGAATCGGTACAGCGCCCTGTTGGAGGTCTTAGACACATCGGACAAAGGCTCGAGCAGCTAGCAAAAGCACTGAATGTTTCATTCCAATTTCGCGCGATTGCATCAAATGCCTTAGATGTCAGCCCCTCCATGCTCACCTCCAGGCCTGGAGAAGCACTCATAGTAAACTTTGCTTTTCTGCTTCACCACATGCCAGATGAAAGCGTTTCAACTGTAAATCTACGAGACAGGCTTCTCCGAATGGTTAAGAGCCTGAAGCCAAAACTGGTAACAGTCGTCGAACAGGACATGAATGCAAATACCACCCCATTCTTTTCAAGATTCGTCGAAACCTATAACTACTACGCTGCAGTTTACGACACTCTTGATGCAACACTTCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGGCAGTGCTTGGCAAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGACAGGGTGGAGAGGTATGAAGTTGCTGGGAAATGGCGGGCAAGAATGACGATGGCTGGCTTCACTTCATGTTCGATGAGCCAAAACGTTACCGACCCGATCCGGAAACTTGTTGAGGAGTATTGTGACAGGTTCAAGATGTATGAGGAAATGGGCACACTACATTTTGGATGGGAAGAGAAAAGCTTGATAGTGACTTCAGTGTGGAGGTAA 1704 44.37 MSLIRTSDPSPLSYGSRQLYSLKGTKNAPDMSTQRFSSEKHRMMYMDDSYCESYEKYFLDFPIEELSISGISTNSFHPNAGSCGVRADSLSPLCDSLTLFDAYQSNSDSTCLESTSPEQLDFEDDQMKRKLQELERDLLGEPDAADYNHEMFANGQSMEIDSEWLLHDSPKESSSSDSNFSTVSSSKDASQTSSQNPRQMLLECASAISEENFEEASVMIEQLRRIVSVQGDPSQRIAAYMVEGLAARLFESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKRIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVQRPVGGLRHIGQRLEQLAKALNVSFQFRAIASNALDVSPSMLTSRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLKPKLVTVVEQDMNANTTPFFSRFVETYNYYAAVYDTLDATLPRDSQDRINVERQCLAKDIVNIVACEGEDRVERYEVAGKWRARMTMAGFTSCSMSQNVTDPIRKLVEEYCDRFKMYEEMGTLHFGWEEKSLIVTSVWR 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43319462 43322800 - Sed0023397.3 Sed07g2858 721722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2858 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 184 566 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed07g2858 567 Pfam GRAS domain family 198 567 IPR005202 -
Sed07g2858 567 MobiDBLite consensus disorder prediction 168 197 - -
Sed07g2858 567 MobiDBLite consensus disorder prediction 171 197 - -
Sed07g2858 567 ProSiteProfiles GRAS family profile. 188 567 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2856 Sed-Chr7:43319462 Sed07g2858 Sed-Chr7:43319462 0.00E+00 dispersed
Sed07g2858 Sed-Chr7:43319462 Sed08g2939 Sed-Chr8:40146524 3.00E-106 dispersed
Sed07g2857 Sed-Chr7:43319462 Sed07g2858 Sed-Chr7:43319462 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39219 PF03514 GRAS 3.20E-130 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2858 K27748 - csv:101206511 986.097