Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2862 ATGCTGATGGACCCTAATTTCTCGGCGGCGGAACCACCGCAGCCGGCGGCGATGGACATAGAACAGATGCCGGAGAATCCCCAACGTGGCTCCCACCACCGCCGCTCCCACTCCGACACTTCCTTCCGCTTGCCCAACCTCGACGAATTTCTCTTCTTCGATCCTTCCGAGCTCGACCTCTCGATCCTCTCTTCCCCTCCCGGCGCCGCCGCCGCCATGTCCGTCGACTCCTCGTCTAATTCCAAGCTCTCCGATGACGCCGTCCGCCCTAAGCCGGAGCCGGTTAACTCCGGACCGTTCGGCGGTCACCTACGCAGCTTGTCGATGGACTCTGATTTCATTAAGAATCTGGACCTCGGCGGCGATTGTGGAGAGATCGATTCTTTGGCGAGGAAAACTCCGGTGAGTGAACATCGGCCAGTTCGTCATCGACATAGTCTATCCATGGATGGTTCTTCGTCCTCGTTTGAGGCCGATTCAGCCCTAGGGTTTGATGGAGTGAAGAAGGCTATGGACCCGGAGAGACTTGCGGAGCTTGCCCTAATCGATCCGAAAAGAGCTAAAAGGATTCTTGCTAATCGACAGTCTGCGGCTCGTTCGAAAGAGAGGAAGACGAGGTACACTAATGAGTTGGAGAGGAAGGTTCAGACTCTGCAGTCTGAAGCAACCACTCTGTCTGCGCAGGTGACGATTCTACAGAGAGATACTACTGGCTTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAAGCTTTGGATCAGCAAGCACAGCTTCGGGACGCTCTGACCGAAGCCTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCAGCAGGCCAGGTTTCACCGATCAATGGAAGTCCTTTCAACCGGCCTCCCCAATACTCATCATCCCGGCCACCTGTTCACCATTTTAGTAGCTCTCACACCCAGCAGGGTCAACAGCAGCCGCCACCCATCTTGGCCACATACCAGCAGCAATCAGATCCAAAATGGACGAACTCGTCCCAGCTTCTCGGTCGTAATCCCGATAGCCAAGCATAG 1044 54.5 MLMDPNFSAAEPPQPAAMDIEQMPENPQRGSHHRRSHSDTSFRLPNLDEFLFFDPSELDLSILSSPPGAAAAMSVDSSSNSKLSDDAVRPKPEPVNSGPFGGHLRSLSMDSDFIKNLDLGGDCGEIDSLARKTPVSEHRPVRHRHSLSMDGSSSSFEADSALGFDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKTRYTNELERKVQTLQSEATTLSAQVTILQRDTTGLTVENKELKLRLQALDQQAQLRDALTEALKEEVQRLRIAAGQVSPINGSPFNRPPQYSSSRPPVHHFSSSHTQQGQQQPPPILATYQQQSDPKWTNSSQLLGRNPDSQA 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43351751 43357975 - Sed0007594.1 Sed07g2862 721726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2862 347 MobiDBLite consensus disorder prediction 71 85 - -
Sed07g2862 347 Coils Coil 201 228 - -
Sed07g2862 347 MobiDBLite consensus disorder prediction 283 347 - -
Sed07g2862 347 CDD bZIP_plant_RF2 186 235 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2862 347 Gene3D - 184 236 - -
Sed07g2862 347 MobiDBLite consensus disorder prediction 63 102 - -
Sed07g2862 347 MobiDBLite consensus disorder prediction 26 40 - -
Sed07g2862 347 SMART brlzneu 181 245 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2862 347 FunFam Transcription factor VIP1 184 237 - -
Sed07g2862 347 Pfam bZIP transcription factor 185 230 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2862 347 SUPERFAMILY Leucine zipper domain 185 237 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2862 347 MobiDBLite consensus disorder prediction 282 347 - -
Sed07g2862 347 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 246 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed07g2862 347 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 328 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed07g2862 347 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2537 Sed-Chr5:37388305 Sed07g2862 Sed-Chr7:43351751 7.40E-08 dispersed
Sed07g2862 Sed-Chr7:43351751 Sed10g2109 Sed-Chr10:37574587 2.10E-89 dispersed
Sed10g2108 Sed-Chr10:37574587 Sed07g2862 Sed-Chr7:43351751 7.40E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39220 PF00170 bZIP_1 4.60E-08 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2862 K20557 - csv:101207973 575.859