Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2865 ATGCTTGGGGACTCTACTAATTCCGCCATGGGCGGTGGCGCCACCGTGCCGGAGCCGACCGACATCGAAAGCAATAACAATAATTCAGGTGATGACGAGAGAGGGAGAAGCGGCGGCGGAGGAGACGACGGCGACCGAAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAGACTTTGGCACTCTTGGAAATACGGTCGGAAATGGATGTGGCTTTTAGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAGTTTCCAGGAAATTAGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAAGAGAAATTTGAAAATGTTTACAAATATCACAAAAGAACCAAAGATGTTCGTAGTGGGAAACCAGATAGCAAATCTTACAAGTTTTTTGAACAATTACAAGCTCTTGAAAATCACCCTCCTCCCAATTTCCACTCCCATTTCTCTAAACCAACACCACCACCTCCGCCACCGGCAATGGCGGCTCCACCGCCAACCACCGTAGTTTCTCACATTCCTTCAACTGTTTCATCGGGCGCCGCCACCGCTTCCGTACCTCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCACATCCAATCCCCACCTCCTCCTGCTCCATTGCCTAACCCTACGATCGTAACTGCCACCGCCACTGCCACCACCGTCCCGTCTTTTCAAACCAACTTTGCAGGGTTTAGGAGCAATGAAGCTGATATCATCTCAAACTCCACGTCTGATGATGTCGACTCGTCGACATCATCAGACGAGGCGTCGAGACGAAGGAGGAGGAAGAGGAAATGGAAGGACTTGTTTGGGAGGTTGATGAGGGAAATGATTGAAAAGCAAGAGGAAATGCAAAGGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAAATGGAAAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCGGCCGCGAAAGACGCCGCCATTACATCCTTCCTTCAAAAAGTGTCTGAATCACAACCGAACAACAACCCATCACCAACACCGCCGCCACAGCCACCACAACCGCAACAACAACCACAACAACAGACAATCCCGACACCGCCCGTGCAACCACCCCAAGGTTCCACAATATTGCAAGTTGTAGTTCCAAATTCCACCCCACAAAAAGTGATGAACAACAATGAAATGTTGCAAATGGAGATGATGAAAACTGATCACAATGGTGGTGAAAGTTATAGTATGAGCCCAGCCAGCTCATCAAGATGGCCAAAAGTAGAAGTTGAAGCATTGATAAAATTGAGAACAAATCTTGACACAAAATATCAAGAAAATGGACCAAAAGGACCATTATGGGAAGACATATCATCAGCCATGAAGAGACTTGGGTACAATAGAAATGCCAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAATACTTCAAGAAAGTTAAGGAGAGTCAAAAATCAAGGCCTGAAGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTACAAGGAGAGAAACAACAATGGCAATGGCAACAAGCTCAACAACATCCCAATCGGATCTTCGACGCCAATTATCTCACATCAGCAACAGCCATTGATGGTTCGACCCGAGCAACAATGGCCTCCACAACAAGAGAGCGCCCGGCCTGACTCAGGCAACGAAGAGATGGAGAGCGACCCAATGGATAAAGATGACGAGGACGATGACGAGGATGAAGGTGGTGGAAACTATGAGATTGTAGCAAGCAAGCCAGCTTCGATGAGCACTACAGAGTGA 1836 46.84 MLGDSTNSAMGGGATVPEPTDIESNNNNSGDDERGRSGGGGDDGDRSFGGNRWPRQETLALLEIRSEMDVAFRDASVKGPLWEQVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKDVRSGKPDSKSYKFFEQLQALENHPPPNFHSHFSKPTPPPPPPAMAAPPPTTVVSHIPSTVSSGAATASVPHLMNISFSQPNPTIHIQSPPPPAPLPNPTIVTATATATTVPSFQTNFAGFRSNEADIISNSTSDDVDSSTSSDEASRRRRRKRKWKDLFGRLMREMIEKQEEMQRRFLEAIEKREQERVVREEAWRMQEMEKINREREILAQERSMAAAKDAAITSFLQKVSESQPNNNPSPTPPPQPPQPQQQPQQQTIPTPPVQPPQGSTILQVVVPNSTPQKVMNNNEMLQMEMMKTDHNGGESYSMSPASSSRWPKVEVEALIKLRTNLDTKYQENGPKGPLWEDISSAMKRLGYNRNAKRCKEKWENINKYFKKVKESQKSRPEDSKTCPYFHQLDALYKERNNNGNGNKLNNIPIGSSTPIISHQQQPLMVRPEQQWPPQQESARPDSGNEEMESDPMDKDDEDDDEDEGGGNYEIVASKPASMSTTE 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43392232 43395432 + Sed0014016.1 Sed07g2865 721729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2865 611 MobiDBLite consensus disorder prediction 577 595 - -
Sed07g2865 611 MobiDBLite consensus disorder prediction 1 26 - -
Sed07g2865 611 MobiDBLite consensus disorder prediction 355 385 - -
Sed07g2865 611 Pfam Myb/SANT-like DNA-binding domain 433 520 IPR044822 -
Sed07g2865 611 Pfam Myb/SANT-like DNA-binding domain 51 137 IPR044822 -
Sed07g2865 611 MobiDBLite consensus disorder prediction 147 165 - -
Sed07g2865 611 MobiDBLite consensus disorder prediction 348 388 - -
Sed07g2865 611 MobiDBLite consensus disorder prediction 27 41 - -
Sed07g2865 611 MobiDBLite consensus disorder prediction 523 611 - -
Sed07g2865 611 FunFam Trihelix transcription factor GT-2 53 114 - -
Sed07g2865 611 Gene3D - 435 496 - -
Sed07g2865 611 Gene3D - 53 114 - -
Sed07g2865 611 ProSiteProfiles Myb-like domain profile. 51 109 IPR001005 -
Sed07g2865 611 MobiDBLite consensus disorder prediction 523 569 - -
Sed07g2865 611 CDD GT1 51 116 - -
Sed07g2865 611 ProSiteProfiles Myb-like domain profile. 427 491 IPR001005 -
Sed07g2865 611 PANTHER FI21293P1 26 574 - -
Sed07g2865 611 MobiDBLite consensus disorder prediction 1 54 - -
Sed07g2865 611 CDD GT1 434 498 - -
Sed07g2865 611 SMART sant 431 493 IPR001005 -
Sed07g2865 611 SMART sant 49 111 IPR001005 -
Sed07g2865 611 FunFam Trihelix transcription factor GT-2 435 496 - -
Sed07g2865 611 Coils Coil 284 304 - -
Sed07g2865 611 MobiDBLite consensus disorder prediction 246 269 - -
Sed07g2865 611 MobiDBLite consensus disorder prediction 139 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2865 Sed-Chr7:43392232 Sed10g2101 Sed-Chr10:37483322 1.20E-89 dispersed
Sed07g2865 Sed-Chr7:43392232 Sed07g2866 Sed-Chr7:43410313 2.70E-76 tandem
Sed10g2100 Sed-Chr10:37458956 Sed07g2865 Sed-Chr7:43392232 8.10E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39221 PF13837 Myb_DNA-bind_4 1.30E-21 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2865 - - - 0.0