Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2866 ATGGATGTCGAATCCAGCAGGCCGGCACCGGTAGAAGCTGGTAGCGGAGATGGTGGAGGCGGGGCGTCTAATTCGGGCGAAGAAGATAAGGGATTGCTATTGTTTGAAGATGGAGAGAGGAACTATGGTGGAAACCGGTGGCCTAAACAAGAGACTTTGGCTTTGTTGAAGATAAGGTCCGATATGGATGGAGTTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGTAAATTGGGAGAGCTTGGATTCATTCGAACTCCGAAGAAATGCAAAGAGAAATTTGAGAATGTTTATAAGTATCACAAAAGAACCAAAGAAGGTCCAAGTGGGAAATCCGACAAAAACAGCAAAAAGGGTTATAGATTTTCGGTTGAATTGCAAGCTTTTGATAATCTTCGTAGGAATCAAATTTCATTTCAATCTCAACACGACCACCAGCCGCCGCCTCAGCCGCCGCCTTCGTTTATTTTATCAACCAATAACACAAAAAACAACAACTCTTTTCCTCTCAATTTTTCAAACATGTTTTCGAGCTCCAAGTCGTCCTCGACTGCATCAGAGGACGATCCGTTTCATAGACGGAGGAGAAAGAAGAGGAAGTGGAATGATTTCTTTGTGACATTGACAAAAAAGGTGATAGAGAAGCAAGAGGGTCTTCAAGTAAAATTCTTAGAAGCCTTGGAAAGAATAGAGAATCAAAGAGAAATGAGAGAGGAAGAATGGAGGATGAAAAATATGACAATTTTCAATCAAGAACATGAAGATTTAGTCCAAGAGAGGTCCACGGCCGCCGAGAAAGGCGCCACCCTCGTAACACTTTTGCAAAAAATAGCCCCTCCATCTCGTTTCGTGCAAAACAACGAGAGTAATAGAAAGGTGACCACCGCTACAGGAAGCACTTCGAGATGGCCGAAGGCGGAAATAGAAGCATTGATAAGGTTAAGGACCGAATTGGAAATGAAGTATCAAGAGAATGGACCAAAAGGGATATTATGGGATGAGATTTCAGCAGCTATGAGAGGGCTTGGATATAATAGAAGCACAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGATGAAATATAGCAACAAGAAGAGGCCAGAAGATTCCAAGACATGCACCTATTTTCACCAATTGGATGCTCTATACAAAGAGAAAGAGAAAGCAATGAGAAATAATTTTGATATCAATAGCCAAATGGAGCCATTAATGGTTGAACCAGAACAACAATGGCCACCTCTTCCATTTCAAGCCAATCAAATGATGGGAAATTTGCAAAGAATAAATGTAGAGGAAGATCAAGAGGAAGATGAAGGAAGTAGCAGCACAGATGTTGAAGATTGTTGA 1380 41.01 MDVESSRPAPVEAGSGDGGGGASNSGEEDKGLLLFEDGERNYGGNRWPKQETLALLKIRSDMDGVFRDATHKAPLWDEVSSKLGELGFIRTPKKCKEKFENVYKYHKRTKEGPSGKSDKNSKKGYRFSVELQAFDNLRRNQISFQSQHDHQPPPQPPPSFILSTNNTKNNNSFPLNFSNMFSSSKSSSTASEDDPFHRRRRKKRKWNDFFVTLTKKVIEKQEGLQVKFLEALERIENQREMREEEWRMKNMTIFNQEHEDLVQERSTAAEKGATLVTLLQKIAPPSRFVQNNESNRKVTTATGSTSRWPKAEIEALIRLRTELEMKYQENGPKGILWDEISAAMRGLGYNRSTKRCKEKWENINKYFKKMKYSNKKRPEDSKTCTYFHQLDALYKEKEKAMRNNFDINSQMEPLMVEPEQQWPPLPFQANQMMGNLQRINVEEDQEEDEGSSSTDVEDC 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43410313 43412620 - Sed0015540.1 Sed07g2866 721730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2866 459 ProSiteProfiles Myb-like domain profile. 39 103 IPR001005 -
Sed07g2866 459 FunFam Trihelix transcription factor GT-2 47 108 - -
Sed07g2866 459 MobiDBLite consensus disorder prediction 442 459 - -
Sed07g2866 459 MobiDBLite consensus disorder prediction 161 190 - -
Sed07g2866 459 SMART sant 43 105 IPR001005 -
Sed07g2866 459 SMART sant 304 366 IPR001005 -
Sed07g2866 459 Pfam Myb/SANT-like DNA-binding domain 306 393 IPR044822 -
Sed07g2866 459 Pfam Myb/SANT-like DNA-binding domain 45 118 IPR044822 -
Sed07g2866 459 CDD GT1 306 371 - -
Sed07g2866 459 MobiDBLite consensus disorder prediction 144 199 - -
Sed07g2866 459 MobiDBLite consensus disorder prediction 437 459 - -
Sed07g2866 459 ProSiteProfiles Myb-like domain profile. 306 364 IPR001005 -
Sed07g2866 459 FunFam Trihelix transcription factor GT-2 308 369 - -
Sed07g2866 459 Gene3D - 47 108 - -
Sed07g2866 459 Gene3D - 308 369 - -
Sed07g2866 459 CDD GT1 45 110 - -
Sed07g2866 459 PANTHER FI21293P1 18 430 - -
Sed07g2866 459 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2629 Sed-Chr3:42203659 Sed07g2866 Sed-Chr7:43410313 3.90E-09 dispersed
Sed03g2630 Sed-Chr3:42203659 Sed07g2866 Sed-Chr7:43410313 4.00E-09 dispersed
Sed07g2866 Sed-Chr7:43410313 Sed10g2101 Sed-Chr10:37483322 6.20E-150 dispersed
Sed07g2865 Sed-Chr7:43392232 Sed07g2866 Sed-Chr7:43410313 2.70E-76 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39222 PF13837 Myb_DNA-bind_4 8.20E-20 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2866 - - - 0.0