Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2866 | ATGGATGTCGAATCCAGCAGGCCGGCACCGGTAGAAGCTGGTAGCGGAGATGGTGGAGGCGGGGCGTCTAATTCGGGCGAAGAAGATAAGGGATTGCTATTGTTTGAAGATGGAGAGAGGAACTATGGTGGAAACCGGTGGCCTAAACAAGAGACTTTGGCTTTGTTGAAGATAAGGTCCGATATGGATGGAGTTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGTAAATTGGGAGAGCTTGGATTCATTCGAACTCCGAAGAAATGCAAAGAGAAATTTGAGAATGTTTATAAGTATCACAAAAGAACCAAAGAAGGTCCAAGTGGGAAATCCGACAAAAACAGCAAAAAGGGTTATAGATTTTCGGTTGAATTGCAAGCTTTTGATAATCTTCGTAGGAATCAAATTTCATTTCAATCTCAACACGACCACCAGCCGCCGCCTCAGCCGCCGCCTTCGTTTATTTTATCAACCAATAACACAAAAAACAACAACTCTTTTCCTCTCAATTTTTCAAACATGTTTTCGAGCTCCAAGTCGTCCTCGACTGCATCAGAGGACGATCCGTTTCATAGACGGAGGAGAAAGAAGAGGAAGTGGAATGATTTCTTTGTGACATTGACAAAAAAGGTGATAGAGAAGCAAGAGGGTCTTCAAGTAAAATTCTTAGAAGCCTTGGAAAGAATAGAGAATCAAAGAGAAATGAGAGAGGAAGAATGGAGGATGAAAAATATGACAATTTTCAATCAAGAACATGAAGATTTAGTCCAAGAGAGGTCCACGGCCGCCGAGAAAGGCGCCACCCTCGTAACACTTTTGCAAAAAATAGCCCCTCCATCTCGTTTCGTGCAAAACAACGAGAGTAATAGAAAGGTGACCACCGCTACAGGAAGCACTTCGAGATGGCCGAAGGCGGAAATAGAAGCATTGATAAGGTTAAGGACCGAATTGGAAATGAAGTATCAAGAGAATGGACCAAAAGGGATATTATGGGATGAGATTTCAGCAGCTATGAGAGGGCTTGGATATAATAGAAGCACAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGATGAAATATAGCAACAAGAAGAGGCCAGAAGATTCCAAGACATGCACCTATTTTCACCAATTGGATGCTCTATACAAAGAGAAAGAGAAAGCAATGAGAAATAATTTTGATATCAATAGCCAAATGGAGCCATTAATGGTTGAACCAGAACAACAATGGCCACCTCTTCCATTTCAAGCCAATCAAATGATGGGAAATTTGCAAAGAATAAATGTAGAGGAAGATCAAGAGGAAGATGAAGGAAGTAGCAGCACAGATGTTGAAGATTGTTGA | 1380 | 41.01 | MDVESSRPAPVEAGSGDGGGGASNSGEEDKGLLLFEDGERNYGGNRWPKQETLALLKIRSDMDGVFRDATHKAPLWDEVSSKLGELGFIRTPKKCKEKFENVYKYHKRTKEGPSGKSDKNSKKGYRFSVELQAFDNLRRNQISFQSQHDHQPPPQPPPSFILSTNNTKNNNSFPLNFSNMFSSSKSSSTASEDDPFHRRRRKKRKWNDFFVTLTKKVIEKQEGLQVKFLEALERIENQREMREEEWRMKNMTIFNQEHEDLVQERSTAAEKGATLVTLLQKIAPPSRFVQNNESNRKVTTATGSTSRWPKAEIEALIRLRTELEMKYQENGPKGILWDEISAAMRGLGYNRSTKRCKEKWENINKYFKKMKYSNKKRPEDSKTCTYFHQLDALYKEKEKAMRNNFDINSQMEPLMVEPEQQWPPLPFQANQMMGNLQRINVEEDQEEDEGSSSTDVEDC | 459 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 43410313 | 43412620 | - | Sed0015540.1 | Sed07g2866 | 721730 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2866 | 459 | ProSiteProfiles | Myb-like domain profile. | 39 | 103 | IPR001005 | - | |
Sed07g2866 | 459 | FunFam | Trihelix transcription factor GT-2 | 47 | 108 | - | - | |
Sed07g2866 | 459 | MobiDBLite | consensus disorder prediction | 442 | 459 | - | - | |
Sed07g2866 | 459 | MobiDBLite | consensus disorder prediction | 161 | 190 | - | - | |
Sed07g2866 | 459 | SMART | sant | 43 | 105 | IPR001005 | - | |
Sed07g2866 | 459 | SMART | sant | 304 | 366 | IPR001005 | - | |
Sed07g2866 | 459 | Pfam | Myb/SANT-like DNA-binding domain | 306 | 393 | IPR044822 | - | |
Sed07g2866 | 459 | Pfam | Myb/SANT-like DNA-binding domain | 45 | 118 | IPR044822 | - | |
Sed07g2866 | 459 | CDD | GT1 | 306 | 371 | - | - | |
Sed07g2866 | 459 | MobiDBLite | consensus disorder prediction | 144 | 199 | - | - | |
Sed07g2866 | 459 | MobiDBLite | consensus disorder prediction | 437 | 459 | - | - | |
Sed07g2866 | 459 | ProSiteProfiles | Myb-like domain profile. | 306 | 364 | IPR001005 | - | |
Sed07g2866 | 459 | FunFam | Trihelix transcription factor GT-2 | 308 | 369 | - | - | |
Sed07g2866 | 459 | Gene3D | - | 47 | 108 | - | - | |
Sed07g2866 | 459 | Gene3D | - | 308 | 369 | - | - | |
Sed07g2866 | 459 | CDD | GT1 | 45 | 110 | - | - | |
Sed07g2866 | 459 | PANTHER | FI21293P1 | 18 | 430 | - | - | |
Sed07g2866 | 459 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2629 | Sed-Chr3:42203659 | Sed07g2866 | Sed-Chr7:43410313 | 3.90E-09 | dispersed | |
Sed03g2630 | Sed-Chr3:42203659 | Sed07g2866 | Sed-Chr7:43410313 | 4.00E-09 | dispersed | |
Sed07g2866 | Sed-Chr7:43410313 | Sed10g2101 | Sed-Chr10:37483322 | 6.20E-150 | dispersed | |
Sed07g2865 | Sed-Chr7:43392232 | Sed07g2866 | Sed-Chr7:43410313 | 2.70E-76 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39222 | PF13837 | Myb_DNA-bind_4 | 8.20E-20 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2866 | - | - | - | 0.0 |