Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2870 ATGTCCCGATCGCTGGTGCAGCCGGTGGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTGAAAAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTTCTTTCATGGCGTTCTGGCGTGGAGAAAGATTTGGATGAGGTTTTGCAATCGCAGATTGTTTATTCAAATGTTTCCAAAGGGGTTCTTGCCAAAACTAAAGATTTGAAAGCAGCCTTTGGCGTAGATGATCAGGCAGAAATTTGTCTGAAGATTCTTAAAGAAGGGGAACTCCAAATTGCAGGGAAGGAAAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATTGCAACCATTGTTATGCAAAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAACGGCTCATGCATGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCCCTAGAGGTCATTCACGAGCTCCAAAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATGCGATATACCGTTCCTGAACAGAACTTCGCATCTCTCCTTGAGAAGTTAAATGCCTGGAATGCTAGCATCGTTTCCAATGAGCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGGGACTGTAATCCATTAATGACTGAACTACAAGGAAAATTTGAAGTTCTCTCTTTTTGCTTGCATGAGGAAGGGGACACCAATGTAGATCAATATGATGATGATTACGAGAGCGTTGAACTCCCACCCAAGCAAATCAAAGAACCATCCATTCCTCAGCTAAGTGAAGCTTTACAAAAACAGACAATCTCGGTTGATGGCGGAAATGCACCGAAGGAAGGTAAACGCTGCAGCACATGCAACGTAGCTGTTGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGCGAATGGCATAAGCATAACGTCAAGCGCAAGACCAAGAATCTCCCGCCCCTGACCGAAGAAGAGTGCATGGTAGAATTGGCAATGGGCGACTCTGAGTCTGACCTCAAAGACTATTCATTTTGA 1074 44.04 MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIKEPSIPQLSEALQKQTISVDGGNAPKEGKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43442939 43445572 + Sed0001170.1 Sed07g2870 721734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2870 357 FunFam SBDS, ribosome maturation factor 3 96 - -
Sed07g2870 357 Pfam SBDS protein, C-terminal domain 174 239 IPR046928 -
Sed07g2870 357 Gene3D - 1 96 IPR036786 -
Sed07g2870 357 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Sed07g2870 357 ProSitePatterns Zinc finger C2H2 type domain signature. 298 320 IPR013087 -
Sed07g2870 357 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 248 IPR039100 -
Sed07g2870 357 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254(InterPro)
Sed07g2870 357 NCBIfam ribosome assembly factor SBDS 13 230 IPR002140 GO:0042256(InterPro)
Sed07g2870 357 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Sed07g2870 357 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Sed07g2870 357 SUPERFAMILY beta-beta-alpha zinc fingers 287 327 IPR036236 -
Sed07g2870 357 Gene3D - 100 172 IPR037188 -
Sed07g2870 357 FunFam SBDS, ribosome maturation factor 100 172 - -
Sed07g2870 357 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Sed07g2870 357 Gene3D - 174 251 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2870 K14574 - csv:101215380 656.751