Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2870 | ATGTCCCGATCGCTGGTGCAGCCGGTGGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTGAAAAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTTCTTTCATGGCGTTCTGGCGTGGAGAAAGATTTGGATGAGGTTTTGCAATCGCAGATTGTTTATTCAAATGTTTCCAAAGGGGTTCTTGCCAAAACTAAAGATTTGAAAGCAGCCTTTGGCGTAGATGATCAGGCAGAAATTTGTCTGAAGATTCTTAAAGAAGGGGAACTCCAAATTGCAGGGAAGGAAAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATTGCAACCATTGTTATGCAAAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAACGGCTCATGCATGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCCCTAGAGGTCATTCACGAGCTCCAAAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATGCGATATACCGTTCCTGAACAGAACTTCGCATCTCTCCTTGAGAAGTTAAATGCCTGGAATGCTAGCATCGTTTCCAATGAGCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGGGACTGTAATCCATTAATGACTGAACTACAAGGAAAATTTGAAGTTCTCTCTTTTTGCTTGCATGAGGAAGGGGACACCAATGTAGATCAATATGATGATGATTACGAGAGCGTTGAACTCCCACCCAAGCAAATCAAAGAACCATCCATTCCTCAGCTAAGTGAAGCTTTACAAAAACAGACAATCTCGGTTGATGGCGGAAATGCACCGAAGGAAGGTAAACGCTGCAGCACATGCAACGTAGCTGTTGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGCGAATGGCATAAGCATAACGTCAAGCGCAAGACCAAGAATCTCCCGCCCCTGACCGAAGAAGAGTGCATGGTAGAATTGGCAATGGGCGACTCTGAGTCTGACCTCAAAGACTATTCATTTTGA | 1074 | 44.04 | MSRSLVQPVGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGVDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMHEIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRMRYTVPEQNFASLLEKLNAWNASIVSNEQSGNQQRSIICELDPSFYRDCNPLMTELQGKFEVLSFCLHEEGDTNVDQYDDDYESVELPPKQIKEPSIPQLSEALQKQTISVDGGNAPKEGKRCSTCNVAVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVELAMGDSESDLKDYSF | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 43442939 | 43445572 | + | Sed0001170.1 | Sed07g2870 | 721734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2870 | 357 | FunFam | SBDS, ribosome maturation factor | 3 | 96 | - | - | |
Sed07g2870 | 357 | Pfam | SBDS protein, C-terminal domain | 174 | 239 | IPR046928 | - | |
Sed07g2870 | 357 | Gene3D | - | 1 | 96 | IPR036786 | - | |
Sed07g2870 | 357 | SUPERFAMILY | FYSH domain | 13 | 96 | IPR036786 | - | |
Sed07g2870 | 357 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 298 | 320 | IPR013087 | - | |
Sed07g2870 | 357 | PANTHER | RIBOSOME MATURATION PROTEIN SBDS | 1 | 248 | IPR039100 | - | |
Sed07g2870 | 357 | Pfam | SBDS protein, domain II | 111 | 171 | IPR018978 | GO:0042254(InterPro) | |
Sed07g2870 | 357 | NCBIfam | ribosome assembly factor SBDS | 13 | 230 | IPR002140 | GO:0042256(InterPro) | |
Sed07g2870 | 357 | SUPERFAMILY | Hypothetical protein AF0491, middle domain | 98 | 171 | IPR037188 | - | |
Sed07g2870 | 357 | ProSitePatterns | Uncharacterized protein family UPF0023 signature. | 46 | 65 | IPR018023 | - | |
Sed07g2870 | 357 | SUPERFAMILY | beta-beta-alpha zinc fingers | 287 | 327 | IPR036236 | - | |
Sed07g2870 | 357 | Gene3D | - | 100 | 172 | IPR037188 | - | |
Sed07g2870 | 357 | FunFam | SBDS, ribosome maturation factor | 100 | 172 | - | - | |
Sed07g2870 | 357 | Pfam | Shwachman-Bodian-Diamond syndrome (SBDS) protein | 16 | 102 | IPR019783 | - | |
Sed07g2870 | 357 | Gene3D | - | 174 | 251 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2870 | K14574 | - | csv:101215380 | 656.751 |