Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2871 ATGGTGCCTTCGGGGCCATCTACACCCATTGGTGGGCCACAGTCTGTTTCACCATCACTTTTGAGATCAAATTCTGGAATGATGGGAGCACATGGGGTTCCTTCTCAGTCAGCTTTTCCTTCTCTTGTATCTCCACAAACTCAGTTCAGTAGTATGAATATGCTTGGTAATCAGCCATTCGGGAATGGAGTTCCGAATTATGGGCCCTCAGGTCTCGGAAACAGCCATCGAGCAGGTATGGATTCTGATTCTGGGTCAGATCCATTTTCACTTGTTGGCAATGGTGTGAACTTCAACAATACCCCATCGTCATTAGTGGTATTAAATACAGCAAACGTTGGTTCATCTAGTCAAGTTTCAGGGCCACAATTTTCAAACCATTCTAGCAGCCAAATGATACCCAATCAACAGCAAATTGAACCCCAGAATTTCCAACATAGTCAGCATTCAATGCAACAATTCACTACCTCTAATGATGCACAACAGTCGCAGCAGCAACATCAATTCCAACCTATTCGAGGAAGCTCATGTGGTGTTGGACCTGTCAAGTTAGAGCCTCAAATGAATAATAATGATCTTCAAGGGCAGCAGCTACAGAACCAGGAGTTGCAATCAATGATGAATCTTGGTTCTTCACCGGAACCGCAACAATTTCAATCGATGAGAAACTTGGGTCCTGCCCAATTGGAGTCTCAACAGTCTGATCCATCATTGTTTCGACAGCAGCAACATCAACAACAACAGCAACAACAACAGTTACTCGGCATGTCTAGGCAGGCCTCTCAGGCTGCTGCTGCTGCGCAGATTAATCTTTTGCAACAACAAAGATTCTTGCAATTTCAACATCAACAGCAACTCCTGAAAGCTATTCATCAGCAACGACCACATTTTCCTCAACAATTTCAACAGCAAAATTTTCCATTGAGATCTCCCGTAAAACCAGTTTATGAACCTGGCATGTGTGCTCGACGTTTAACAAATTATGTCTGCCGACAACAGCAAAGGCCTGGAGATAACAATATTGAGTTCTGGAGAGATTTTGTTTCGGATTACTTTGCTCCCCATGCCAAAAAGAAATGGTGTGTCTCCATGTATGGAAATAGTCGCCAAACAACTGGTGTATTTCCACAGGATGTTTGGCGTTGTGAAATATGCAACCGCAAGCCTAGTCGAGGTTTTGAAGCAACTTTTGAAGTTCTTCCTAGGCTGTTTAAACTAAAGTATGAAAGCGGAACTCTTGAAGAGCTTCTCTATGTTGATATGCCCTACGAATATCATAATTCATCTGGACAAATCGTCCTGGATTATGCAAAAGCAATACAAGTAAGCGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGCAAACTTCGGATAGTTTTTTCTCCAGACGTAAAGATATGTTCTTGGGAATTTTGTGCTCGACGTCATGAAGAGCTTATTCCTCGAAGGTTACTAATGCCTCAGGTTAGTCAGCTGGGGGCAGCTGCTCAGATGTATCAGACTGCTATTCAAAATGCATCACCTAACTTGTCTACTCCGGAGTTGCAAAATAATTGCAACATGTTTGTGGGCTCAGCCAGACAATTAGCAAAGGCATTGGAAGTGCCATTAGTAAACGACTTTGGATATACTAAGAGATATGTCCGGTGCCTTCAGATATCAGAAGTCATCAATAGTATGAAGGACTTGATAGATTACAGCCAAGAAACTTCGACTGGACCAATCGAGAGTTTGGCCAAGTTTCCACGGAAGACAAATGCTTCACCAGGATTCCACAGCCAAGCTCAAAACACCGTGCAACAATTATCTCAGCCCCAGAAAATTATTGATCAAAATGCGAACGGTGACCATTCTGTTCAGGCTGCTGCTAACAATGGTGTTCCAAATGCAAATAACAATGCTAATCAAGCTTCAACATCAGCTCCTGTTGGGTTACACCACCAGAATTCCATGAACTCCAGACACCAGAACTCTATCAATAGTGGTGGCAGCCCTTACGGCAGGGATTCTGCCCAAACATCATCTCCAGGCCCCTCGACGACGGTTGCTCAGAAACAAGCGAACCCCTCCTTCCAAACGCCTACATTGGCCTCACCTAACAATCCTCCGCAGTCATCAATCGGCACTGCAACAACCACTAACCACGTGAGTGCAGCCAATTCTCCAGCAAATGTTACCTTGCAACAGCCAACACACTCTTCCGAAGTCGATCGAAATGATTCCCGGAGTTCTGTGCAAAAGATTATGCAGGAATACTGGATGTCGAACCAACTAAACGAGATGAATGCAGTGGCTGATGTTTCCTCTCTAACCGGGGATGTGAAACCTGTTAATGCAATGTTGGCAGCAAACAACATTATGAGTCTCAATGGACGGAACTGCCTCGACGGGAATGGAATTGTTAATGGTGTTTCGGGTATTAGGAGCACGGGTTATGGCTCGATGGATGGGGGACTTGCCCAGGCTTCTATGGTCAATGGAATGAAGTCTGCAATGGGAAACAACTCGATTTCGAATGGGAGAAACGGGATAGCGTCCTTGGCTCGAGAACAGAGCATAAATCATCAAGATTTGGGAGAACAGCTCTTTAATGGATATAATAGTCTTCAATTCGATTATTGA 2622 44.13 MVPSGPSTPIGGPQSVSPSLLRSNSGMMGAHGVPSQSAFPSLVSPQTQFSSMNMLGNQPFGNGVPNYGPSGLGNSHRAGMDSDSGSDPFSLVGNGVNFNNTPSSLVVLNTANVGSSSQVSGPQFSNHSSSQMIPNQQQIEPQNFQHSQHSMQQFTTSNDAQQSQQQHQFQPIRGSSCGVGPVKLEPQMNNNDLQGQQLQNQELQSMMNLGSSPEPQQFQSMRNLGPAQLESQQSDPSLFRQQQHQQQQQQQQLLGMSRQASQAAAAAQINLLQQQRFLQFQHQQQLLKAIHQQRPHFPQQFQQQNFPLRSPVKPVYEPGMCARRLTNYVCRQQQRPGDNNIEFWRDFVSDYFAPHAKKKWCVSMYGNSRQTTGVFPQDVWRCEICNRKPSRGFEATFEVLPRLFKLKYESGTLEELLYVDMPYEYHNSSGQIVLDYAKAIQVSVFEQLRVVRDGKLRIVFSPDVKICSWEFCARRHEELIPRRLLMPQVSQLGAAAQMYQTAIQNASPNLSTPELQNNCNMFVGSARQLAKALEVPLVNDFGYTKRYVRCLQISEVINSMKDLIDYSQETSTGPIESLAKFPRKTNASPGFHSQAQNTVQQLSQPQKIIDQNANGDHSVQAAANNGVPNANNNANQASTSAPVGLHHQNSMNSRHQNSINSGGSPYGRDSAQTSSPGPSTTVAQKQANPSFQTPTLASPNNPPQSSIGTATTTNHVSAANSPANVTLQQPTHSSEVDRNDSRSSVQKIMQEYWMSNQLNEMNAVADVSSLTGDVKPVNAMLAANNIMSLNGRNCLDGNGIVNGVSGIRSTGYGSMDGGLAQASMVNGMKSAMGNNSISNGRNGIASLAREQSINHQDLGEQLFNGYNSLQFDY 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43447024 43454385 - Sed0008940.1 Sed07g2871 721735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2871 873 MobiDBLite consensus disorder prediction 61 86 - -
Sed07g2871 873 MobiDBLite consensus disorder prediction 1 43 - -
Sed07g2871 873 MobiDBLite consensus disorder prediction 582 602 - -
Sed07g2871 873 MobiDBLite consensus disorder prediction 115 134 - -
Sed07g2871 873 MobiDBLite consensus disorder prediction 618 711 - -
Sed07g2871 873 MobiDBLite consensus disorder prediction 143 173 - -
Sed07g2871 873 MobiDBLite consensus disorder prediction 143 189 - -
Sed07g2871 873 MobiDBLite consensus disorder prediction 587 602 - -
Sed07g2871 873 Pfam LIM-domain binding protein 324 578 IPR029005 -
Sed07g2871 873 MobiDBLite consensus disorder prediction 8 24 - -
Sed07g2871 873 MobiDBLite consensus disorder prediction 226 254 - -
Sed07g2871 873 PANTHER LIM DOMAIN-BINDING PROTEIN 1 844 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2871 Sed-Chr7:43447024 Sed11g1320 Sed-Chr11:28958595 3.00E-246 dispersed
Sed07g2871 Sed-Chr7:43447024 Sed07g2872 Sed-Chr7:43447024 0.00E+00 tandem
Sed10g2090 Sed-Chr10:37332533 Sed07g2871 Sed-Chr7:43447024 0.00E+00 wgd
Sed03g0449 Sed-Chr3:2690155 Sed07g2871 Sed-Chr7:43447024 1.90E-246 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2871 - - - 0.0