Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2881 ATGAGTTTCATTCATTGTTGCATGTCAGAGGAGGGATTCAATAGAAAATCCTTGAAAAAAACCATTAAGGAGTATCATGAAACTAAAACTTTGGCATCATTTGCCAACATTCCCTTCAAATCTGGTAAAAACAGGCAAAGGTACACAACAAAGGAGATAAAGAAGTTTGGAAAAGGAAGCATCTTAGCTCAAATTTTTACGTTTCGAGAGCTTTGCGTTGCAACAGATAACTTCAACCGCGAAAATCTATTAGGGGAAGGTGGTTTTGGAAGAGTTTACAAAGGCATAATTAAAACCACAAAACAAGTGGCTGTGAAGCAACTTGATCGAAATGGATTCCAAGGAGATAGAGAATTTCTTGTAGAGGTTTTGATGTTAAGCCTTCTTCACCATCCAAATCTTGTCAATTTGGTTGGCTATTCTATTGATGCCAATCAAAGGGTTTTGGTGTATGAGTACATGGCTAATGGCTCCTTGGAGGATCATCTTCTAGATTCAACTTCAGAAAAGCCAGCTCTAGATTGGCAAACAAGGATTAAAATCGTCGAAGGAGCAGCTCGAGGACTCGAATACTTACACGAAACAAAACCTCCCGTGATATTTCGCGACTTTAAATCTTCAAACATATTGTTGGATGAAGAATTCAATCCAAAACTCTCAGACTTTGGTCTTGCAAAGTTAGGTCCCATGGAAGATAAATCTCATGTTTCCACGAGAGTGATGGGAACCTATGGTTACTGTGCTCCAGAATATGCTCTCACAGGAAAGTTGACTACGAAATCGGATGTGTATAGTTTCGGAGTCTTGTTTCTAGAGACAATCACCGGAAGAAGAGTTATAGACAACTCAAAACCCAAAGCAGAAAAAAATTTAATTACTTGGGCAGAACCATTACTGAGAGATAGAAGGAAATTCGTAGCATTGGCAGATCCAAAGCTAAAAGGGAATTACCCAGTGAAGGCTCTGTATCAAGCTTTGGCAGTGGCAGCCATGTGTGTACAAGAGGAAGCTAATACTCGCCCGTTGATTAGCGACGTCGTTACAGCTCTCCAGTATATAACTCCAAACGACGATCATGATCTCGATGAAATAGACAATATAGTTCATGACCATGCCCAATTAATAACAACTGCAAATCAACATAAAAAACAGATCACATAG 1161 39.28 MSFIHCCMSEEGFNRKSLKKTIKEYHETKTLASFANIPFKSGKNRQRYTTKEIKKFGKGSILAQIFTFRELCVATDNFNRENLLGEGGFGRVYKGIIKTTKQVAVKQLDRNGFQGDREFLVEVLMLSLLHHPNLVNLVGYSIDANQRVLVYEYMANGSLEDHLLDSTSEKPALDWQTRIKIVEGAARGLEYLHETKPPVIFRDFKSSNILLDEEFNPKLSDFGLAKLGPMEDKSHVSTRVMGTYGYCAPEYALTGKLTTKSDVYSFGVLFLETITGRRVIDNSKPKAEKNLITWAEPLLRDRRKFVALADPKLKGNYPVKALYQALAVAAMCVQEEANTRPLISDVVTALQYITPNDDHDLDEIDNIVHDHAQLITTANQHKKQIT 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43496072 43499585 + Sed0001201.1 Sed07g2881 721745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2881 386 CDD STKc_IRAK 84 351 - -
Sed07g2881 386 Gene3D Transferase(Phosphotransferase) domain 1 154 375 - -
Sed07g2881 386 ProSiteProfiles Protein kinase domain profile. 78 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2881 386 PANTHER OS07G0668900 PROTEIN 36 358 - -
Sed07g2881 386 Pfam Protein kinase domain 79 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2881 386 SUPERFAMILY Protein kinase-like (PK-like) 60 353 IPR011009 -
Sed07g2881 386 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524(InterPro)
Sed07g2881 386 Gene3D Phosphorylase Kinase; domain 1 47 153 - -
Sed07g2881 386 FunFam Serine/threonine-protein kinase PBS1 154 367 - -
Sed07g2881 386 FunFam Serine/threonine-protein kinase CDL1-like 49 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2881 Sed-Chr7:43496072 Sed12g0854 Sed-Chr12:5311168 1.90E-120 dispersed
Sed07g1920 Sed-Chr7:33349097 Sed07g2881 Sed-Chr7:43496072 7.20E-163 transposed
Sed13g1171 Sed-Chr13:15483185 Sed07g2881 Sed-Chr7:43496072 2.30E-156 transposed
Sed03g0437 Sed-Chr3:2615148 Sed07g2881 Sed-Chr7:43496072 7.70E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79574 PF00069 Pkinase 2.10E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2881 - - - 0.0