Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2881 | ATGAGTTTCATTCATTGTTGCATGTCAGAGGAGGGATTCAATAGAAAATCCTTGAAAAAAACCATTAAGGAGTATCATGAAACTAAAACTTTGGCATCATTTGCCAACATTCCCTTCAAATCTGGTAAAAACAGGCAAAGGTACACAACAAAGGAGATAAAGAAGTTTGGAAAAGGAAGCATCTTAGCTCAAATTTTTACGTTTCGAGAGCTTTGCGTTGCAACAGATAACTTCAACCGCGAAAATCTATTAGGGGAAGGTGGTTTTGGAAGAGTTTACAAAGGCATAATTAAAACCACAAAACAAGTGGCTGTGAAGCAACTTGATCGAAATGGATTCCAAGGAGATAGAGAATTTCTTGTAGAGGTTTTGATGTTAAGCCTTCTTCACCATCCAAATCTTGTCAATTTGGTTGGCTATTCTATTGATGCCAATCAAAGGGTTTTGGTGTATGAGTACATGGCTAATGGCTCCTTGGAGGATCATCTTCTAGATTCAACTTCAGAAAAGCCAGCTCTAGATTGGCAAACAAGGATTAAAATCGTCGAAGGAGCAGCTCGAGGACTCGAATACTTACACGAAACAAAACCTCCCGTGATATTTCGCGACTTTAAATCTTCAAACATATTGTTGGATGAAGAATTCAATCCAAAACTCTCAGACTTTGGTCTTGCAAAGTTAGGTCCCATGGAAGATAAATCTCATGTTTCCACGAGAGTGATGGGAACCTATGGTTACTGTGCTCCAGAATATGCTCTCACAGGAAAGTTGACTACGAAATCGGATGTGTATAGTTTCGGAGTCTTGTTTCTAGAGACAATCACCGGAAGAAGAGTTATAGACAACTCAAAACCCAAAGCAGAAAAAAATTTAATTACTTGGGCAGAACCATTACTGAGAGATAGAAGGAAATTCGTAGCATTGGCAGATCCAAAGCTAAAAGGGAATTACCCAGTGAAGGCTCTGTATCAAGCTTTGGCAGTGGCAGCCATGTGTGTACAAGAGGAAGCTAATACTCGCCCGTTGATTAGCGACGTCGTTACAGCTCTCCAGTATATAACTCCAAACGACGATCATGATCTCGATGAAATAGACAATATAGTTCATGACCATGCCCAATTAATAACAACTGCAAATCAACATAAAAAACAGATCACATAG | 1161 | 39.28 | MSFIHCCMSEEGFNRKSLKKTIKEYHETKTLASFANIPFKSGKNRQRYTTKEIKKFGKGSILAQIFTFRELCVATDNFNRENLLGEGGFGRVYKGIIKTTKQVAVKQLDRNGFQGDREFLVEVLMLSLLHHPNLVNLVGYSIDANQRVLVYEYMANGSLEDHLLDSTSEKPALDWQTRIKIVEGAARGLEYLHETKPPVIFRDFKSSNILLDEEFNPKLSDFGLAKLGPMEDKSHVSTRVMGTYGYCAPEYALTGKLTTKSDVYSFGVLFLETITGRRVIDNSKPKAEKNLITWAEPLLRDRRKFVALADPKLKGNYPVKALYQALAVAAMCVQEEANTRPLISDVVTALQYITPNDDHDLDEIDNIVHDHAQLITTANQHKKQIT | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 43496072 | 43499585 | + | Sed0001201.1 | Sed07g2881 | 721745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2881 | 386 | CDD | STKc_IRAK | 84 | 351 | - | - | |
Sed07g2881 | 386 | Gene3D | Transferase(Phosphotransferase) domain 1 | 154 | 375 | - | - | |
Sed07g2881 | 386 | ProSiteProfiles | Protein kinase domain profile. | 78 | 353 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g2881 | 386 | PANTHER | OS07G0668900 PROTEIN | 36 | 358 | - | - | |
Sed07g2881 | 386 | Pfam | Protein kinase domain | 79 | 346 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed07g2881 | 386 | SUPERFAMILY | Protein kinase-like (PK-like) | 60 | 353 | IPR011009 | - | |
Sed07g2881 | 386 | ProSitePatterns | Protein kinases ATP-binding region signature. | 84 | 106 | IPR017441 | GO:0005524(InterPro) | |
Sed07g2881 | 386 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 153 | - | - | |
Sed07g2881 | 386 | FunFam | Serine/threonine-protein kinase PBS1 | 154 | 367 | - | - | |
Sed07g2881 | 386 | FunFam | Serine/threonine-protein kinase CDL1-like | 49 | 153 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g2881 | Sed-Chr7:43496072 | Sed12g0854 | Sed-Chr12:5311168 | 1.90E-120 | dispersed | |
Sed07g1920 | Sed-Chr7:33349097 | Sed07g2881 | Sed-Chr7:43496072 | 7.20E-163 | transposed | |
Sed13g1171 | Sed-Chr13:15483185 | Sed07g2881 | Sed-Chr7:43496072 | 2.30E-156 | transposed | |
Sed03g0437 | Sed-Chr3:2615148 | Sed07g2881 | Sed-Chr7:43496072 | 7.70E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79574 | PF00069 | Pkinase | 2.10E-45 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2881 | - | - | - | 0.0 |