Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2892 ATGGAGCTCTTCAAGGTTTTGGTTCTGGGTCTTGTCTCTTTGATCTTGCTGGTTTGTCCACTATGGCTTGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTGAGAACCAGCTTGCTGGACCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTCAATCCATGTACATGGTTTCATGTTACATGCAATAATGACAATAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAACTTGCAGTATTTAGAGCTCTACAGTAATAACATAAGTGGAGTTATTCCTAGTGATCTTGGGAATCTTACTAGTTTGGTGAGCTTAGATCTTTATTTGAACCGTTTTTCGGGTCCAATTCCTGACACATTGGGCAAGCTGTCAAAACTGCGATTCCTCCGGCTGAACAACAACACCTTATCAGGTCCCATTCCTTTGTCACTGACTAATATTTCATCCCTTCAAGTCTTGGATCTGTCGAATAACCATCTCTCAGGCCCGGTTCCGGACAATGGTTCCTTCTCCTTATTCACTCCTATAAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACGGGACGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCCTTCGTCCCACCGCCACCTGTACCTTCACCAGGAGGGAATAGTGTAACTGGAGCGATTGCAGGTGGAGTTGCTGCAGGCGCTGCTTTACTTTTTGCAGCTCCAGCACTTGCATTTGCATGGTGGCGTCGTAGAAAACCTCGGGAAGTTTTCTTTGACGTTCCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAACGATTTTCACTGAGAGAGTTACAAGTAGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCCGACAGTACTTTAGTAGCCGTCAAGAGACTCAAGGAAGAACGTACACCTGGTGGAGAGCTCCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCCGTGCATCGGAACCTGCTACGACTGCGCGGATTTTGCATGACGCCAACTGAAAGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCATCTTGTTTAAGAGAACGAACACCATCCCAACCACCTCTCGAATGGAAAACAAGGAAGCGAATTGCATTGGGTTCTGCAAGAGGGTTATCTTATTTGCATGATCACTGTGATCCAAAGATTATTCACCGTGACGTGAAAGCTGCGAATATTTTGCTGGATGAGGAGTTTGAAGCCGTTGTAGGGGATTTCGGGTTGGCTAAACTTATGGATTACAAAGACACTCATGTCACCACTGCCGTACGTGGTACTATTGGACATATAGCTCCTGAGTACCTTTCCACCGGGAAATCTTCTGAGAAAACTGATGTTTTCGGGTACGGTATCATGCTTCTAGAGCTGATCACTGGACAAAGGGCTTTTGATTTGGCTCGACTTGCGAATGATGATGATGTCATGTTACTTGATTGGGTGAAAGGACTTCTGAAAGAGAAGAAGCTAGAAATGCTGGTTGATCCTGATCTTCAGAACAATTATGTTGAATCTGAGGTAGAACAGTTGATTCAGGTTGCTCTGCTGTGCACACAAGGGTCCCCGATGGAACGACCAAAGATGTCCGATGTGGTGAGAATGCTCGAAGGCGATGGATTGGCAGAAAGATGGGACGAGTGGCAAAAGGTGGAAATCCTTCGGCATGAAATCGATCTATTGCCTCATCCAAACTCAGATTGGATTGTTGATTCAACTGAAAATCTACATGCAGTTGAGCTTTCAGGTCCTAGATGA 1878 45.31 MELFKVLVLGLVSLILLVCPLWLVSANMEGDALHSLRTSLLDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPSDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNTLSGPIPLSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPVPSPGGNSVTGAIAGGVAAGAALLFAAPALAFAWWRRRKPREVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADSTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERTPSQPPLEWKTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMERPKMSDVVRMLEGDGLAERWDEWQKVEILRHEIDLLPHPNSDWIVDSTENLHAVELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43545165 43551738 + Sed0014522.1 Sed07g2892 721756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2892 625 SUPERFAMILY Protein kinase-like (PK-like) 281 577 IPR011009 -
Sed07g2892 625 Pfam Protein tyrosine and serine/threonine kinase 305 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2892 625 SUPERFAMILY L domain-like 30 191 - -
Sed07g2892 625 Pfam Leucine Rich Repeat 166 184 IPR001611 GO:0005515(InterPro)
Sed07g2892 625 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Sed07g2892 625 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Sed07g2892 625 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Sed07g2892 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 625 - -
Sed07g2892 625 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Sed07g2892 625 FunFam Somatic embryogenesis receptor-like kinase 1 379 596 - -
Sed07g2892 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Sed07g2892 625 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Sed07g2892 625 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
Sed07g2892 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2892 625 SMART serkin_6 302 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed07g2892 625 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Sed07g2892 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524(InterPro)
Sed07g2892 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed07g2892 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2892 Sed-Chr7:43545165 Sed13g0980 Sed-Chr13:7562481 8.80E-240 dispersed
Sed05g0378 Sed-Chr5:2578436 Sed07g2892 Sed-Chr7:43545165 2.60E-67 transposed
Sed10g1963 Sed-Chr10:36342632 Sed07g2892 Sed-Chr7:43545165 1.10E-27 transposed
Sed10g1721 Sed-Chr10:34204923 Sed07g2892 Sed-Chr7:43545165 4.20E-290 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79575 PF00069 Pkinase 1.20E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2892 K13418 - csv:101208695 1097.03