Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2901 ATGGAACATATGGAAGGCCCCCCTCCGGCCGATATCTGTTCGATCTGCCATGGCAGATTCAACACCCCTTGCCAAGCAAATTGTTCACACTGGTTCTGCGGTAAGTGTATAATGCTTGTGTGGGATCATGGATCGCCACTACAGCCGTGTAAATGCCCCTTATGTCGCCGACATATCACTTTATTGGTTCCTTCTGAGGTTTCAGCAACACAGCAAAGTGACCCTGAGGTTTCTCGTGTTCTTAACAATATTAGGACTTATAACCGTCATTTTGGTGGCAGCTCAACTGGTTTAAATCAGCGACTGCGGGACCTTCCTTTTCTTCTACGGAGGTTGCTTCGGGAACTCCTCAATCCGCAGAGATCTCTTCCTCTTGTCATTAGAGCACGTGTTTACATTGCAATGTTCCTAAGTGTAGTCTATGCTGTGAGTCCCATCGATATCATACCTGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCTTTATACTGCTCATCTGCCTACTTTATGTTGCTGCAATATATCGATCGGTTCTCCAAAATCGCCATGGAGGAACTTGA 567 45.33 MEHMEGPPPADICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPLQPCKCPLCRRHITLLVPSEVSATQQSDPEVSRVLNNIRTYNRHFGGSSTGLNQRLRDLPFLLRRLLRELLNPQRSLPLVIRARVYIAMFLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICLLYVAAIYRSVLQNRHGGT 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43608578 43611815 + Sed0010548.1 Sed07g2901 721765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2901 188 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Sed07g2901 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 116 IPR013083 -
Sed07g2901 188 SMART ring_2 13 55 IPR001841 -
Sed07g2901 188 SUPERFAMILY RING/U-box 12 62 - -
Sed07g2901 188 ProSiteProfiles Zinc finger RING-type profile. 13 56 IPR001841 -
Sed07g2901 188 PANTHER UNCHARACTERIZED 3 185 IPR038896 GO:0061630(InterPro)
Sed07g2901 188 Pfam Protein of unknown function (DUF1232) 133 167 IPR010652 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2901 Sed-Chr7:43608578 Sed07g2903 Sed-Chr7:43608578 2.80E-80 dispersed
Sed07g2901 Sed-Chr7:43608578 Sed07g2902 Sed-Chr7:43608578 3.70E-77 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2901 K15707 - cit:102613940 260.766