Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed07g2901 | ATGGAACATATGGAAGGCCCCCCTCCGGCCGATATCTGTTCGATCTGCCATGGCAGATTCAACACCCCTTGCCAAGCAAATTGTTCACACTGGTTCTGCGGTAAGTGTATAATGCTTGTGTGGGATCATGGATCGCCACTACAGCCGTGTAAATGCCCCTTATGTCGCCGACATATCACTTTATTGGTTCCTTCTGAGGTTTCAGCAACACAGCAAAGTGACCCTGAGGTTTCTCGTGTTCTTAACAATATTAGGACTTATAACCGTCATTTTGGTGGCAGCTCAACTGGTTTAAATCAGCGACTGCGGGACCTTCCTTTTCTTCTACGGAGGTTGCTTCGGGAACTCCTCAATCCGCAGAGATCTCTTCCTCTTGTCATTAGAGCACGTGTTTACATTGCAATGTTCCTAAGTGTAGTCTATGCTGTGAGTCCCATCGATATCATACCTGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCTTTATACTGCTCATCTGCCTACTTTATGTTGCTGCAATATATCGATCGGTTCTCCAAAATCGCCATGGAGGAACTTGA | 567 | 45.33 | MEHMEGPPPADICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPLQPCKCPLCRRHITLLVPSEVSATQQSDPEVSRVLNNIRTYNRHFGGSSTGLNQRLRDLPFLLRRLLRELLNPQRSLPLVIRARVYIAMFLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICLLYVAAIYRSVLQNRHGGT | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 43608578 | 43611815 | + | Sed0010548.1 | Sed07g2901 | 721765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed07g2901 | 188 | ProSitePatterns | Zinc finger RING-type signature. | 28 | 37 | IPR017907 | - | |
Sed07g2901 | 188 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 116 | IPR013083 | - | |
Sed07g2901 | 188 | SMART | ring_2 | 13 | 55 | IPR001841 | - | |
Sed07g2901 | 188 | SUPERFAMILY | RING/U-box | 12 | 62 | - | - | |
Sed07g2901 | 188 | ProSiteProfiles | Zinc finger RING-type profile. | 13 | 56 | IPR001841 | - | |
Sed07g2901 | 188 | PANTHER | UNCHARACTERIZED | 3 | 185 | IPR038896 | GO:0061630(InterPro) | |
Sed07g2901 | 188 | Pfam | Protein of unknown function (DUF1232) | 133 | 167 | IPR010652 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g2901 | Sed-Chr7:43608578 | Sed07g2903 | Sed-Chr7:43608578 | 2.80E-80 | dispersed | |
Sed07g2901 | Sed-Chr7:43608578 | Sed07g2902 | Sed-Chr7:43608578 | 3.70E-77 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed07g2901 | K15707 | - | cit:102613940 | 260.766 |