Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed07g2910 ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGTCGTCGGGCCGAGAGGGCACGAAAGTTCCGGCAGAGGGTCATCATTGGCGTGGTCTCGGTCTCCATGATCGTTCTGGTTGTGGTTGCCGCCATGTTCGTCCAAGTCTCCCCCACCTCCAAATCCACCACCAAAAGCGACCACAATGATGAAAACTACAAACAACCTGAGACACCACCAAACACCAAACAGGTGTCTCGAGTGGATAAAATGGTCAAGATGATATGCAACTCCACAGACTACAAAGAAAAATGCGAGAGCACTTTGAAGGACCATCCCGATTCGTCGGACCCCAAAGACCTCATCAAGCAGGCCATATCGGCAGCGGCGGAGGAGGTGAAGTCAGCGCTAAAGAAAGCAAGCGGCTTCAAGTTTGCCAGCCCGGAGGAAAAAGGGGCGTTCGAGGATTGCAAGGAACTGTTGGACGACGCGGTGGAGGAATTAGACAGAGCTGCGAGCGAAGTGGGCAAGAAGAATCTAGGGAAGCTGACAGCTAAAACAACGCCAGATCTGAACAACTGGCTGAGCGCAGTGATCTCGTATCACGAGACTTGTGTAGACGGGTTTCCAGAGGGAAAGTTGAAGAACGAAATGGAGAAGACGATGAAGGATGGAAAGGAGCTTACAAGTAACTCGCTCGCCATGATTTCACAAGTGGCTTTGTTCTTTTCCACATTTGAGATGCCCGAAGAGGCCGAGAAAGGAGCTACAGCACGACGTCGTCTAATGGCCAGCGATGGTCTACCCGCCTGGATGGACAGCAATGAACGGAGGATGTTGAAGGGCGCTGCGGACGGGGATAAGCCCAAACCCAATGTTGTGGTGGCCCAAGATGGATCAGGAGATTTCAAAACTATTAACAAAGCCTTGGCTGCCATGCCTCCAAAATATGATGGACGGTACGTGATCTATGTTAAGGAAGGGATCTACCAAGAGACAGTGGTGATTACAAAAAAGATGGTGAATGTCACCATGTATGGAGACGGATCTCAAAAGAGCATGATCAGTGGGAGCAAGAACTTTGTGGATGGCGTTAGAACCTTTCAAACTGCAACATTTGTGGTCGTGGGAGAGGGGTTCATGGGGCAAGCCATAGGATTCAGAAACACAGCGGGTCCAAAAAAGCACCAAGCAGTGGCGGCCAGAGTGCAGGCCGACAGGGCCATATTCGTGAGTTGTCGATTCGATGGGTACCAAGACACATTGTACGCACAAGCCCATCGCCAATATTATCGAAGTTGTCTCATAACAGGGACCATCGACTTCATCTTCGGGGATGCCGCGGCCATTTTCCAAAGCTGCAACCTCATGCTCAGAAAGCCTTTGGAGAACCAACAAATCATAGTGACGGCACAAGGCAGAACCGACAAACATGAAACCACAGGCATAGTGCTCCAAAAGTGCAAGATTACGCCCGATAAGACACTAGAGCCGGTGAAGGCCCAATTCAAAAGCTATTTGGGAAGGCCTTGGAAAGAGTTCTCTAGAACCGTTGTTATGGAGTCTACCATTGAGGACGTCATTCATCCCGATGGATGGATGCCTTGGCAAGGGGACTTTGCACTCAACACCTTGTACTATGCTGAATTTAACAACCAAGGTCCGGGGGCTAAGACCGATGCCAGAGTCAAATGGCCTGGTCACAAGCTTATTGACAAGGAAGAGGCTGCAAAGTTCACCATTGGAACTTTTCTCGAGTTGGATTGGATCGAGAGTTCCTCCGCTCCTGTTCACGCCGGCCTCTATTGA 1782 50.17 MVFQDFDQISERRRAERARKFRQRVIIGVVSVSMIVLVVVAAMFVQVSPTSKSTTKSDHNDENYKQPETPPNTKQVSRVDKMVKMICNSTDYKEKCESTLKDHPDSSDPKDLIKQAISAAAEEVKSALKKASGFKFASPEEKGAFEDCKELLDDAVEELDRAASEVGKKNLGKLTAKTTPDLNNWLSAVISYHETCVDGFPEGKLKNEMEKTMKDGKELTSNSLAMISQVALFFSTFEMPEEAEKGATARRRLMASDGLPAWMDSNERRMLKGAADGDKPKPNVVVAQDGSGDFKTINKALAAMPPKYDGRYVIYVKEGIYQETVVITKKMVNVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVVVGEGFMGQAIGFRNTAGPKKHQAVAARVQADRAIFVSCRFDGYQDTLYAQAHRQYYRSCLITGTIDFIFGDAAAIFQSCNLMLRKPLENQQIIVTAQGRTDKHETTGIVLQKCKITPDKTLEPVKAQFKSYLGRPWKEFSRTVVMESTIEDVIHPDGWMPWQGDFALNTLYYAEFNNQGPGAKTDARVKWPGHKLIDKEEAAKFTIGTFLELDWIESSSAPVHAGLY 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43672743 43678802 + Sed0002581.1 Sed07g2910 721774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed07g2910 593 SUPERFAMILY Pectin lyase-like 280 577 IPR011050 -
Sed07g2910 593 CDD PMEI-like_3 86 231 - -
Sed07g2910 593 Pfam Pectinesterase 283 577 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed07g2910 593 Gene3D - 281 593 IPR012334 -
Sed07g2910 593 MobiDBLite consensus disorder prediction 50 76 - -
Sed07g2910 593 SMART PMEI_2 78 226 IPR006501 GO:0004857(InterPro)
Sed07g2910 593 PANTHER PECTINESTERASE 29 583 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed07g2910 593 FunFam Pectinesterase 277 592 - -
Sed07g2910 593 FunFam Pectinesterase 79 231 - -
Sed07g2910 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 229 IPR035513 -
Sed07g2910 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 230 IPR035513 -
Sed07g2910 593 NCBIfam pectinesterase inhibitor domain 80 230 IPR006501 GO:0004857(InterPro)
Sed07g2910 593 Coils Coil 145 165 - -
Sed07g2910 593 ProSitePatterns Pectinesterase signature 2. 427 436 IPR033131 -
Sed07g2910 593 Pfam Plant invertase/pectin methylesterase inhibitor 82 226 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0010 Sed-Chr2:1906781 Sed07g2910 Sed-Chr7:43672743 1.60E-219 dispersed
Sed07g2910 Sed-Chr7:43672743 Sed09g0255 Sed-Chr9:2036900 1.40E-130 dispersed
Sed07g2910 Sed-Chr7:43672743 Sed09g0254 Sed-Chr9:2032683 9.80E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed07g2910 - - - 0.0