Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0023 ATGGCGGATGTGTCTCTGATAATGAAAGAGATCGAGGACACGGCTGCTCGCCTCGGGATCGATCTTTCCCAACTTGATTTTGACTCCATTCGTCTCCCTCCCGGCGAAGATTTCGGCATCATCAGCGATGATGAGGAGGTTCTACAAGAGGAGGGTCTAGAGTTCGAGTCCGGGTTCGGAAACATCATCGTGGTTGACAATCTTCCCGTTGTTCCTCCGGAGAAGTTTGACAAACTCGAAGGTGTCGTTCGGAAGATTTTTGGTCAGATTGGAGCGATTAAGGACGATGGTCTATGGATGCCTGTCGACCCTACAACGCACAAAACTTTAGGCTACTGCTTTATAGAGTATGGCACCCCGCAGGAGGCTGAGCTTGCGAAAGAGAAGACTGATGGTTACAAGCTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTTGACAGATTTATGAAAGTCCCAGACGAGTGGGCTCCTCCTGAAATTAACCCATATATTCCAGGGGAAAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTCTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTCTACAAGCGTCAATTCTGGACTGAGAGTTTTGTTGAGTGGTCCCCCTTGGGGACTTACCTTGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGCGCAGGTACCTTCAACCGTCTGATGCGCTTTGCCCATCAGCAGGTTAAGTTAATCGACTTTTCTCCCGGTGAAAAATATCTGGTAACTTACAGCAGTCATGAGCCCAACAATCCCCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTGAGATCTGGGAAAGTTATGAGGGATTTCAAGGGGAGTCCTGATGATTTTGCCAGTGGAGGGACTGGTGGTGTTGCCGGTGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGAAGATAAATACTTTGCTAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATTGACAAAAAATCTTTGAAGGTCGAAAATGTTATGGATTTCTGTTGGTCCCCTACTGATCCCATTATTTCACTCTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCTGCTAGGGTGAGTCTTGTTCAAATCCCCAGCAAGGAGGAGTTGAGACAAAAAAATCTTTTCAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCCAGGTTGACAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCTATTGAAGTGTTGGAGCTTGAGAATAAGAACGACAAGATCATTGCATTTGCCTGGGAGCCGAAGGGGCATAGGTTTGCAGTTATTCACGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACGAACAACAGTGGCCGAGTATCCAAACTTGCAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCGCCTGCTGGACGCTTCATTATTCTTGCTGGTTTGAAAGGTTTTAACGGACAGTTGGAATTCTACAATGTTGATGACCTGGAGACGATGGCAACTGCTGAGCATTTCATGGCTACTGATATTGAATGGGATCCCACTGGAAGGTATGTTGCAACTGCTGTAACTTCCGTTCATGAGATGGAAAATGGTTTCAACATATGGTCCTTTCATGGAAAGCTTCTCTATCGAACTTTGAAGGACCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCAGCATCGTTGTTGAGTGCTGAGAAAGAGGAAGAGATAGCAAAGAATCTGAAGAAATACAGCAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTGCTGAGCGAACAAGACCGTGAGAAACGGAGAATGTTGAAGGATGAGTGGGAGAAGTGGGTGAATGAATGGAAAAGATTGCACGAAGAGGAGAAGCAGTTGCGGCAGAAACTGCGGGATGGCGAAGCCAGTGACGAGGAAGAAGAATATGAGGCGAAGGAGGTGGAAGTGGAAGAGATTTTGGATGTGTCGGAGGAAGTTTTGTCGTTTGAGCAGGAATGA 2157 46.04 MADVSLIMKEIEDTAARLGIDLSQLDFDSIRLPPGEDFGIISDDEEVLQEEGLEFESGFGNIIVVDNLPVVPPEKFDKLEGVVRKIFGQIGAIKDDGLWMPVDPTTHKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEINPYIPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRQFWTESFVEWSPLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPNNPRDANRIVINIFDVRSGKVMRDFKGSPDDFASGGTGGVAGVSWPVFRWGGGKEDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVQVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTNNSGRVSKLATLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDDLETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRTLKDHFFQFAWRPRPASLLSAEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWEKWVNEWKRLHEEEKQLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSFEQE 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 81324 85824 - Sed0015739.2 Sed08g0023 721799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0023 718 PIRSF Transl_init_eIF3b 8 714 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed08g0023 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 148 IPR000504 GO:0003723(InterPro)
Sed08g0023 718 Pfam RNA recognition motif 83 137 IPR000504 GO:0003723(InterPro)
Sed08g0023 718 Coils Coil 619 639 - -
Sed08g0023 718 MobiDBLite consensus disorder prediction 678 700 - -
Sed08g0023 718 FunFam Eukaryotic translation initiation factor 3 subunit B 56 155 - -
Sed08g0023 718 CDD RRM_eIF3B 60 144 IPR034363 -
Sed08g0023 718 SUPERFAMILY DPP6 N-terminal domain-like 219 594 - -
Sed08g0023 718 Coils Coil 688 708 - -
Sed08g0023 718 FunFam Eukaryotic translation initiation factor 3 subunit B 412 627 - -
Sed08g0023 718 Pfam Eukaryotic translation initiation factor eIF2A 407 607 IPR013979 -
Sed08g0023 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 49 714 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed08g0023 718 Gene3D - 181 384 IPR015943 GO:0005515(InterPro)
Sed08g0023 718 SMART rrm1_1 62 144 IPR000504 GO:0003723(InterPro)
Sed08g0023 718 Gene3D - 56 155 IPR012677 -
Sed08g0023 718 FunFam Eukaryotic translation initiation factor 3 subunit B 182 383 - -
Sed08g0023 718 Gene3D - 416 635 IPR015943 GO:0005515(InterPro)
Sed08g0023 718 SUPERFAMILY RNA-binding domain, RBD 59 142 IPR035979 GO:0003676(InterPro)
Sed08g0023 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 37 709 IPR011400 GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0023 Sed-Chr8:81324 Sed12g2347 Sed-Chr12:33430148 0.00E+00 dispersed
Sed08g0022 Sed-Chr8:81324 Sed08g0023 Sed-Chr8:81324 0.00E+00 tandem
Sed08g0023 Sed-Chr8:81324 Sed08g0024 Sed-Chr8:81324 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0023 K03253 - csv:101213144 1366.67