Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0028 ATGGAGAGCAACAACAACCAAGTCCAGTCGTCCCCTTACGGCCCTCCTCAGGGTCCGGTGGCGGCTCCTCCGTTCCACCACCTCCTCCAGCAGCAGCTTCAGATGTTCTGGTCCTTCCAGCGCCAGGAGATCGAGCAGGTTAACGATTTCAAAAACCACCAGCTTCCTCTGGCTCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTCCGTATGATCTCCGCCGAGGCCCCCATTCTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTCGAGCTCACCATTCGGTCTTGGCTCCACGCCGAAGAGAACAAGAGGCGCACATTGCAGAAGAACGACATTGCCGCCGCCATCACCCGGACCGATATCTTCGATTTCCTCGTTGACATTGTGCCTAGGGATGAGATCAAGGACGACCCTGCCTTGGGACCCTTGGTCGGACCCACTGCTAGTGGAGTCCCCTATTATTATCCCCCCATGGGCCAACCGGCAGCACCTCCCGGGGGCATCATCCTCGGCAGACCCGCTATGGATCCCGCCGGAGTCTATGCTCAACCTCCCTCGCAGGCCTGGCAATCCGTGTGGCAGACCGCGCCCGAGGACGGTTCTTACGCCTCTGGAGGCAGCAGCGCCCAGGGAAATCTTGATGCTCAGAGAAAAAATAACCTTATTGTTCTGGTAGGGGAGGAGCTAGTTGATCGGAAGTTATTCATTGACCTTGTGTGGGAGTTCTTAAGAGGGTCAAAAGGAAAGCTGGAAGTTGGGATAGAGCCAACAGCAAAGACTGTTTGTGAAGGGGGTATAATTTGCCAAGATTATCCTCAAGGGGGTGACGCGGTGATTGAAGGCTTGAACTTTAAAGGTGTGTTTCTCTCAAGAAGTTTCCTTATGAACATGGAAGAGAACATTGCGGTTCATTGCTTAGAGTACAATGAGAGGGTGATGGAAACTTTGGAAGTTTCAATAGATCTTTGCTGA 975 53.33 MESNNNQVQSSPYGPPQGPVAAPPFHHLLQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDPALGPLVGPTASGVPYYYPPMGQPAAPPGGIILGRPAMDPAGVYAQPPSQAWQSVWQTAPEDGSYASGGSSAQGNLDAQRKNNLIVLVGEELVDRKLFIDLVWEFLRGSKGKLEVGIEPTAKTVCEGGIICQDYPQGGDAVIEGLNFKGVFLSRSFLMNMEENIAVHCLEYNERVMETLEVSIDLC 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 107730 111716 + Sed0010355.1 Sed08g0028 721804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0028 324 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g0028 324 Gene3D Histone, subunit A 24 132 IPR009072 GO:0046982(InterPro)
Sed08g0028 324 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 34 137 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Sed08g0028 324 FunFam Nuclear transcription factor Y subunit gamma 24 132 - -
Sed08g0028 324 Pfam Core histone H2A/H2B/H3/H4 48 117 IPR007125 GO:0003677(InterPro)
Sed08g0028 324 SUPERFAMILY Histone-fold 40 126 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0028 Sed-Chr8:107730 Sed10g1805 Sed-Chr10:35109340 4.60E-51 dispersed
Sed07g1598 Sed-Chr7:13031819 Sed08g0028 Sed-Chr8:107730 7.30E-23 transposed
Sed12g2510 Sed-Chr12:34582456 Sed08g0028 Sed-Chr8:107730 7.90E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39224 PF00808 CBFD_NFYB_HMF 4.40E-17 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0028 - - - 0.0