Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0028 | ATGGAGAGCAACAACAACCAAGTCCAGTCGTCCCCTTACGGCCCTCCTCAGGGTCCGGTGGCGGCTCCTCCGTTCCACCACCTCCTCCAGCAGCAGCTTCAGATGTTCTGGTCCTTCCAGCGCCAGGAGATCGAGCAGGTTAACGATTTCAAAAACCACCAGCTTCCTCTGGCTCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTCCGTATGATCTCCGCCGAGGCCCCCATTCTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTCGAGCTCACCATTCGGTCTTGGCTCCACGCCGAAGAGAACAAGAGGCGCACATTGCAGAAGAACGACATTGCCGCCGCCATCACCCGGACCGATATCTTCGATTTCCTCGTTGACATTGTGCCTAGGGATGAGATCAAGGACGACCCTGCCTTGGGACCCTTGGTCGGACCCACTGCTAGTGGAGTCCCCTATTATTATCCCCCCATGGGCCAACCGGCAGCACCTCCCGGGGGCATCATCCTCGGCAGACCCGCTATGGATCCCGCCGGAGTCTATGCTCAACCTCCCTCGCAGGCCTGGCAATCCGTGTGGCAGACCGCGCCCGAGGACGGTTCTTACGCCTCTGGAGGCAGCAGCGCCCAGGGAAATCTTGATGCTCAGAGAAAAAATAACCTTATTGTTCTGGTAGGGGAGGAGCTAGTTGATCGGAAGTTATTCATTGACCTTGTGTGGGAGTTCTTAAGAGGGTCAAAAGGAAAGCTGGAAGTTGGGATAGAGCCAACAGCAAAGACTGTTTGTGAAGGGGGTATAATTTGCCAAGATTATCCTCAAGGGGGTGACGCGGTGATTGAAGGCTTGAACTTTAAAGGTGTGTTTCTCTCAAGAAGTTTCCTTATGAACATGGAAGAGAACATTGCGGTTCATTGCTTAGAGTACAATGAGAGGGTGATGGAAACTTTGGAAGTTTCAATAGATCTTTGCTGA | 975 | 53.33 | MESNNNQVQSSPYGPPQGPVAAPPFHHLLQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDPALGPLVGPTASGVPYYYPPMGQPAAPPGGIILGRPAMDPAGVYAQPPSQAWQSVWQTAPEDGSYASGGSSAQGNLDAQRKNNLIVLVGEELVDRKLFIDLVWEFLRGSKGKLEVGIEPTAKTVCEGGIICQDYPQGGDAVIEGLNFKGVFLSRSFLMNMEENIAVHCLEYNERVMETLEVSIDLC | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 107730 | 111716 | + | Sed0010355.1 | Sed08g0028 | 721804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0028 | 324 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sed08g0028 | 324 | Gene3D | Histone, subunit A | 24 | 132 | IPR009072 | GO:0046982(InterPro) | |
Sed08g0028 | 324 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 34 | 137 | IPR050568 | GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
Sed08g0028 | 324 | FunFam | Nuclear transcription factor Y subunit gamma | 24 | 132 | - | - | |
Sed08g0028 | 324 | Pfam | Core histone H2A/H2B/H3/H4 | 48 | 117 | IPR007125 | GO:0003677(InterPro) | |
Sed08g0028 | 324 | SUPERFAMILY | Histone-fold | 40 | 126 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0028 | Sed-Chr8:107730 | Sed10g1805 | Sed-Chr10:35109340 | 4.60E-51 | dispersed | |
Sed07g1598 | Sed-Chr7:13031819 | Sed08g0028 | Sed-Chr8:107730 | 7.30E-23 | transposed | |
Sed12g2510 | Sed-Chr12:34582456 | Sed08g0028 | Sed-Chr8:107730 | 7.90E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39224 | PF00808 | CBFD_NFYB_HMF | 4.40E-17 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0028 | - | - | - | 0.0 |