Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0032 ATGGCCGCCGCTAACACGAATGTCGCCGCCAGCGGCGTCGACGACCGCGTGTTGGCCACCGCTCAGCAGATCGTGAAGAGCCTCAATACTCCTAAAGAGGTTCGTGAGGACATGCTCTTCATTCTCTCCACCTTTGATAATCGTCTTTCCGGTATCACTACTTTGATCAACGGTGACGATTCGAACGACAAGTTGGCCGCCGCCGAGAAGCTCATTCTTCGTTCCGATCCTAATTCCGATGGCGATGCCGCCAGACGGTCGCTTCATTGGGAGGACTCGCCGGACGAGGCGGCGGAGTATTTGTCGGCGGTGGATGATATACTCCGGTTACTGGAAGGCCTTTCCATCGGCTCGGACTCGGCTGGGATCGTGGACCGGGCGGAAAATGCAATCCAAACGGCCATGTGTCGGCTCGAGACCGAATTCCGCCATATCCTGATCCAGAGCACAGTTCCTCTCGACGCCGATCGCCTCTACGGCTCGATCCGAAGAGTTAATCTCTCTTTTGCGTCCAATTACAGTGAAATCGATTACGATTTCGAGAGTTTTGGCGAAGAGAGTCGCAGTTCCGGGCGGTTTCATGAACGAGGAGCCACAATTGGAGAAGATTCTTGGGTGGACTTGATCCATCCTGATGCGGCTGTTGATCTGTCCGAGATTGCGGATCGTATGATTCGTTCTGGCTATGAAAAGGAATGTGTTCAAGTCTACAGTACGGTTCGTCGTGATGCTTTGGACGAGTGTTTGGCAATTCTTGGCGTTGAACGGCTCAGCATTGAGGAGGTTCAGAAAAGTGACTGGAAATTCTTGGATGAGAAGATGAAGAAATGGATTCAGGCTGTGAAAATTACAGTTCGGGTGATTTTGGACTGTGAGAAAAGGCTTTGTGATCAGATTTTTAATGGTGCCAATGAATCCAAGGAGATTTGCTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTGTTGAATTTTGGTGAGGCAGTGGCTATTGGGAAGAGATCACCCGAGAAGCTGTTCCGAATCTTGGATATGTATGATGCTTTGGCTGGCGTTTTGCACGACTTGGAAGCCATGGTTTCCGACGAGTTTCTGATCGGTGAAGCACAGGGAGTGTTGTCTGGATTGGGAGAAGCAGCCACAGGGACATTTGTTGAGTTTGAGAATGCTATCCAAAACGAAAATTCGAAGAAAACGATGCAAAATGCAGAGATTCACCCGCTTATTCGATATGTGATGAATTATGTGAGATTGCTGGTTGATTACAGTAAGACAATGAACACTCTTTTAGAAGATGAGGAAGTACAAGACTCGCAGAATGAGAATGATCATAATGATAATCTGCAGTTGGAAAGCACGTCGCCTTTAGCTCGTAGATTGTCAATGCTGTTATCATCTTTAGAATCCAATCTTGTGAAAAAATCAAAACTCTATGAGGATGTTGCTATGCAGTTCATATTTCTAATGAACAATATACTGTATATAGTGAAAAAAGTGAAGGATTCTGAGCTTGCGCAGCTGCTCGGCAATCACTGGCTTCGCAGGCATAGCGGTCAAATTCGCCAATATGAAACGAGTTACCTTAGAGCCTCTTGGAGCAAAGTTTTGTCTTGCCTGAAGGATGAAGGCATTGGTGGGAGCACGAGCAATGCCTCCAAGGCAGCTTTGAAGGAAAAGTTCAAGAATTTCAATGCAGGTTTTGAGGAGATCTGCAGGGTCCAAACAACTTGGAAGGTATCAGATTCTCAACTGCGCGATGAGCTGATTATATCCGTTTCGGAGAAGGTGATTCCAGCGTATCGCTCCTTCTTGGGAAGATTTAGAAACCAACTAGAGACCGGAAGGAATTCGGGGAAGTACATAAAGTACACATCCGACGAGTTGGAGAATTCTCTATCAGATTTGTTTGAAGGAACACCTCCTGTTGCACACCCCTTGCGAAGAAAGGGTACTTGA 1956 47.09 MAAANTNVAASGVDDRVLATAQQIVKSLNTPKEVREDMLFILSTFDNRLSGITTLINGDDSNDKLAAAEKLILRSDPNSDGDAARRSLHWEDSPDEAAEYLSAVDDILRLLEGLSIGSDSAGIVDRAENAIQTAMCRLETEFRHILIQSTVPLDADRLYGSIRRVNLSFASNYSEIDYDFESFGEESRSSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRVILDCEKRLCDQIFNGANESKEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLHDLEAMVSDEFLIGEAQGVLSGLGEAATGTFVEFENAIQNENSKKTMQNAEIHPLIRYVMNYVRLLVDYSKTMNTLLEDEEVQDSQNENDHNDNLQLESTSPLARRLSMLLSSLESNLVKKSKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGNHWLRRHSGQIRQYETSYLRASWSKVLSCLKDEGIGGSTSNASKAALKEKFKNFNAGFEEICRVQTTWKVSDSQLRDELIISVSEKVIPAYRSFLGRFRNQLETGRNSGKYIKYTSDELENSLSDLFEGTPPVAHPLRRKGT 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 145981 149008 + Sed0022563.1 Sed08g0032 721808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0032 651 Gene3D Exocyst complex component Exo70 84 643 - -
Sed08g0032 651 SUPERFAMILY Cullin repeat-like 82 637 IPR016159 -
Sed08g0032 651 PANTHER EXOCYST COMPLEX PROTEIN EXO70 22 639 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed08g0032 651 Pfam Exocyst complex component Exo70 N-terminal 65 148 - -
Sed08g0032 651 FunFam Exocyst subunit Exo70 family protein 83 644 - -
Sed08g0032 651 Pfam Exo70 exocyst complex subunit C-terminal 275 634 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1563 Sed-Chr1:11366071 Sed08g0032 Sed-Chr8:145981 7.50E-234 dispersed
Sed08g0032 Sed-Chr8:145981 Sed08g2438 Sed-Chr8:37407388 2.00E-239 dispersed
Sed06g0919 Sed-Chr6:11695105 Sed08g0032 Sed-Chr8:145981 2.60E-117 transposed
Sed08g2120 Sed-Chr8:35182356 Sed08g0032 Sed-Chr8:145981 4.50E-98 transposed
Sed12g2505 Sed-Chr12:34551622 Sed08g0032 Sed-Chr8:145981 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0032 K07195 - csv:101205970 1067.76