Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0040 ATGCCATTAGAGTTTTTGGGCGGTTCTTCCGCCCTCAGTTCGCCACATTCAGCTCCTTTCCGGCAGCGGATGGCAGCCTTTGGCGCTCTTTCACTGTGTCCCGGCAGCCCGCTTCCGCGCCCTCCCTACTCGGTTCGTACTATCCATTGTTGCAGTGGTTCTTCTACTGTTATAGGCAAAAATGTCTCGAAAGTACCCCGCAAAAGACCGGGAAGATTGGAAGGTGCTAGAAAAAGCATGGAAGACTCTGTTCAACGCAAGATGGAACAGTTTTATGAAGGCTCAGATGGTCCACCCCTCCGTATTCTTCCCATTGGCGGCCTTGGTGAAATTGGAATGAATTGTATGCTTGTTGGGAATTATGACCGTTACATTCTGATTGATGCTGGTGTCATGTTTCCTGACCATGATGAGCTTGGTGTTCAGAAAATCATACCTGACACCACATTTATCAAAAGATGGAGTCACAAAATTGAAGCTGTTGTTATTACACATGGTCATGAAGATCACATTGGTGCGTTGCCTTGGGTAATTCCAGCTTTGGATTCCCATACGCCAATATATGCTTCATCCTTTACAGTGGAGCTTATAAAAAAACGTCTGAAGGAAAATGGAATTTTTATTCCTTCTCGACTAAAGGTTTTTAAGACGAAAAAGAGATTCACCGCTGGGCCATTTGAAATAGAGCCCATCAGGGTTACCCATTCCATTCCCGATTGTTGTGGATTAGTTTTTCGTTGTGCTGATGGTACAATTCTTCATACGGGAGACTGGAAGATTGATGAGTCTCCATTGGATGGTAAAGTTTTTGATCGAGAAACTTTGGAACAACTATCGAAAGAGGGAGTTACTCTTATGATGAGTGACTCAACGAATGTACTATCTCCTGGAAGGACAATGAGTGAATCTGTGGTGGCAGATGCACTTTTAAGACGTATCTCTGCAGCTAAAGGAAGAGTTATCACGACTCAATTTGCTTCAAATATACACCGCCTCGGAAGTGTGAAAGCAGCCGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGAATGTCTTTAAGGACGTATCTGGAAGCAGCCTGGAAGGATGGCAAGGCACCAATTGACCCATCAACATTGGTAAAAGTGGAGGACATTGATGCCTACGCTCCAAAAGATTTATTGATTGTCACAACTGGCTCACAAGCAGAACCACGTGCCGCCTTAAATCTTGCATCCTATGGAAGTAGTCACTCTCTTAAACTAAGCAAGGAAGATATGATTTTGTATTCAGCCAAGGTTATTCCTGGTAATGAATCTAGAGTGATGAAAATGTTGAACCGTATATCTGAGATTGGATCAAATATAATAATGGGCAAGAATGAGTTGCTGCACACATCTGGTCATGGATATCGTGGAGAATTAGAGGAAGTACTTCAAATTGTTAAACCGCAACATTTTTTACCCATTCATGGAGAGCTTTTATTCCTCAAGGAGCATGAACTGCTGGGCCGGTCGACAGGCATTCGGCACACAACTGTTATAAAAAATGGAGAAATGCTCGGAGTATCTCATCTAAGAAACAGGAGAGTTTTATCCAATGGTTTCACCTCTCTTGGGAAGGAGAATCTACAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGATCCTCATCTGAGCTTTTCGTTGATGAGAGACTAAAGATTGCAACAGATGGCATTATAGTGGTCAGTATGGAAATCTTGCGACCTCAAACTGTAGATGGTTTAAATGAGACTGGCATCAAAGGAAAACTGAGGATCACAACTCGATGTTTATGGCTTGACAAGGGTAAGCTCTTAGATGCGCTTCATAAAGCCGCTCATGCAGCACTTGCTAGCTGCCCTGTAAATAGCCCTCTAACCCACATGGAAAGAACCGTGTCTGAGCTTCTGAGGAAGATGGTTAGAAAATACAGTGGTAAGAGGCCTGAAGTCATAGTCATGGCTGTGGAGAATCCTGGAGGAGTTCTATCTGAAGAGCTTGCTACAAGGCTTTCAGGGAAGTCTAGTACTGGATTCGGGATGTCAGCACGGAGGAAAGTAGTTGATGGACAACCAACTAAGAACCACTTAAACGGCATAATACCAGATGAAAAAGACGATTTCCATTCTGAGGATAACTCAAGTCAAGAGTCTCAAGGTTATTATATTGAACCTGAAAAACTACTTCCTGAAGAAGACTACAGTTTCTCAAACTCCAACTTGGTAGAGACACAGACCTCTGGTAACGAGGAATTGGACGATTTCTGGAGACCATTTATCACGCCATCCTCTTCTGCTAATGAATTGGTAAAGGAGGACGAAGGTTCTGTTCAACAATCGAAAAATACGTTGGAGATTACGAATGAAGGTGAAGAAGACAGTGATGACGGGTCACTGAATACATCAAATTCTGACGCAAAGTCTGTGAAACGCAATAAATGGAGACCTGAAGAGATCAAGAAACTCATTAAATTGCGTGGGGAATTGCACGTGAGGTTTCAAATTGCCAAGGGACGAATGGCATTATGGGAAGAGATATCCACAAGTATGTTGGCTGATGGAATAAATCGGAGTCCAGGACAGTGCAAATCTCTGTGGGCATCTCTGGTTCAGAAATTTGAGGAAAGCAAAAGTGAAAAGAAAAGCAAGAAGAGTTGGCCATACTTCGAGGAAATGAATGACATATTGTCTGATTCAGAGGCAATGGCAACAAAATGA 2721 42.89 MPLEFLGGSSALSSPHSAPFRQRMAAFGALSLCPGSPLPRPPYSVRTIHCCSGSSTVIGKNVSKVPRKRPGRLEGARKSMEDSVQRKMEQFYEGSDGPPLRILPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDHDELGVQKIIPDTTFIKRWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIYASSFTVELIKKRLKENGIFIPSRLKVFKTKKRFTAGPFEIEPIRVTHSIPDCCGLVFRCADGTILHTGDWKIDESPLDGKVFDRETLEQLSKEGVTLMMSDSTNVLSPGRTMSESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDMILYSAKVIPGNESRVMKMLNRISEIGSNIIMGKNELLHTSGHGYRGELEEVLQIVKPQHFLPIHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGKENLQLKYSDGDKAFGSSSELFVDERLKIATDGIIVVSMEILRPQTVDGLNETGIKGKLRITTRCLWLDKGKLLDALHKAAHAALASCPVNSPLTHMERTVSELLRKMVRKYSGKRPEVIVMAVENPGGVLSEELATRLSGKSSTGFGMSARRKVVDGQPTKNHLNGIIPDEKDDFHSEDNSSQESQGYYIEPEKLLPEEDYSFSNSNLVETQTSGNEELDDFWRPFITPSSSANELVKEDEGSVQQSKNTLEITNEGEEDSDDGSLNTSNSDAKSVKRNKWRPEEIKKLIKLRGELHVRFQIAKGRMALWEEISTSMLADGINRSPGQCKSLWASLVQKFEESKSEKKSKKSWPYFEEMNDILSDSEAMATK 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 187381 198166 - Sed0018235.1 Sed08g0040 721816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0040 906 CDD GT1 813 874 - -
Sed08g0040 906 PANTHER RIBONUCLEASE J 16 906 - -
Sed08g0040 906 Pfam Beta-lactamase superfamily domain 123 260 IPR001279 -
Sed08g0040 906 MobiDBLite consensus disorder prediction 767 813 - -
Sed08g0040 906 MobiDBLite consensus disorder prediction 767 786 - -
Sed08g0040 906 Pfam Myb/SANT-like DNA-binding domain 812 896 IPR044822 -
Sed08g0040 906 Gene3D - 301 451 IPR042173 -
Sed08g0040 906 CDD RNaseJ_MBL-fold 103 514 - -
Sed08g0040 906 SUPERFAMILY Metallo-hydrolase/oxidoreductase 100 514 IPR036866 -
Sed08g0040 906 MobiDBLite consensus disorder prediction 692 720 - -
Sed08g0040 906 Gene3D - 815 876 - -
Sed08g0040 906 SMART Lactamase_B_5a 112 309 IPR001279 -
Sed08g0040 906 ProSiteProfiles Myb-like domain profile. 807 871 IPR001005 -
Sed08g0040 906 Pfam Ribonuclease J, beta-CASP domain 317 442 - -
Sed08g0040 906 Gene3D - 104 516 IPR036866 -
Sed08g0040 906 MobiDBLite consensus disorder prediction 700 714 - -
Sed08g0040 906 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 454 499 IPR011108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0040 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g135 . . . . . . . . . . Cma10g00071 Cma11g00042 Car10g00058 Car11g00038 Sed08g0040 . Cpe04g01607 Bhi02g00533 Tan09g2359 Cmetu02g0049 . Hepe09g0058 . . Cla06g01733 Cam06g1924 Cec06g1974 Cco06g1978 Clacu06g1880 Cmu06g1822 Cre06g2637 . . . . . . . . . . . . . . . . . Cmo10g00066 Cmo11g00043 . . . . . . . . . . . . . . . . . . . . Lsi06g01633 Csa01g00066 Chy02g02654 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39227 PF12706 Lactamase_B_2 2.70E-11 CL0381 Sed TF