Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0048 ATGGCGAGAGTTAACGACAACTGGGAGAGGCTGGTGCGTGCGACTCTGAAGAGAGAGCAGCTCAGAAACGCAGGGCGCGGCCATGGGAGAACCAGCAGTGGGATCGTTGGAGCTGCACCGCCCTCTCTTGGAAAGACAACCAACATCGACGCAATTTTGCACGCTGCCGATGAAATCCAAGCTGAGGACTCCACCGTTGCCAGAATCTTGTGTGAGCAGGCATACGGAATGGCACAAAACTTAGATCCCAACAGTGATGGTAGAGGTGTTCTTCAGTTCAAAACTGGATTGATGTCTGTTATTAAGCAAAAACTTGTAAGGAAGGATGGAGCGTCCATCGATCGTCATCGTGATATCGAACATCTGTGGGAGTTCTACAAGCAATACAAGAGACGACATAAAGTAGATGATATACAAAGAGAAGAACAGAAATGGCGTGAGTCGGGAGTAATTAGTGCTAGCTTGGGAGAGTTGGAGCTCAGATATTCTGAAGCGAAGAATGTAATTGCAAACCTTAGGGCTTTAGTTGAGGTGATGGATGCCCTCAAGGGAGATGCAGATCCTCAGGGAGTTGGAAGATTGATTATGGAGGAGCTACGAAGAGTTAGAAGTTCAGACACTACATTATCTGGGGAATTTGTACCCTACAATATTGTCCCTTTGGACTCCCAATCACTAACCAATGCCATTGGAATTTTCCCAGAAGTTAGGGCTACTATATCTGCAATTAGATACACTGAGCATTTCCCTAGACTGCCTTCGGAATTTCAGATATCTGGGCAAAGGAGTGCCGATATGTTTGACCTTCTTGAATTTTTATTTGGATTCCAGAGGGACAACATAAGAAATCAACGAGAGCATGTAGTTCTCATGGTAGCAAATGCTCAATCTCGACTTGGCATACCTGATAATGGTGATCCAAAAATTGATGAGAAAGCTGTCAACGAGGTTTTCTTGAAGGTGCTTAATAACTACATTAAATGGTGTAAATACTTGCGTATTCGCCTTGCATGGAATAGCTTTGAGGCAATTAATAGGGACAGAAAGCTTTTCCTTGTTTCACTGTACTTGCTTATATGGGGTGAAGCTGCAAATGTCCGCTTCCTTCCTGAATGCATTTGCTATTTGTTTCACCATATGGCAAAAGAATTGGATGCTAAACTTGATCATGGAGAAGCAGTTCCTTCTGATAACTGTAAGCTGCAAGATGGTTCTGTGTCTTTCCTCCAACGAATCATTTGCCCTATATACAAGACAATTGTATCTGAAACTGAAAGAAACAAAAATGGGAAAGCCGCCCATTCAGCTTGGAGGAACTATGATGATTTCAATGAATACTTTTGGTCACCTACTTGCTTCGAATTGGGCTGGCCAATGAGGGAGGAATCGAGTTTTTTACAGAAGCCTAGAGGCTCGAAACGGACTGGCAAGACTTCTTTTGTTGAGCATCGTACATATTTTCACCTATACCGCAGTTTCCACCGTCTCTGGATCTTTTTGGCAGTTATATTCCAAGCTTTGACAATTTTTGCCTTCCATAATGAGCGTTTGAATTTGGATACTTTAAAAGATATTCTTAGCATTGGGCCAACATTTGCAATCATGAACTTCATCGAGAGTTGCTTAGACGTGTTGCTTACTTTCGGGGCTTACACCACTGCAAGAGGAATGGCTATATCGAGGATTGTTATTAGGTTCTTCTGGTGGGGACTGAGTTCTGTTTTTGTGACCTATGTTTATGTGAAGGTTCTTGAAGAAAGAAATACTCGAAGCTCAGATAATTCATTCTATTTTCGAATATATATTCTAGTGTTGGGTGTTTATGCTTCTTTACGCCTTGTGGTTTCAATGTTGCTAAAGTTACCTGCATGCCATAAACTTTCTGAGATGTCAGATCAGTCTTTTTTTCAATTTTTCAAATGGATCTATCAGGAACGTTATTATGTTGGTCGTGGTTTATATGAAAAACCAAGTGATTATTGCAGATATGTAGCCTTTTGGCTGGTGCTCTTGATTTGTAAATTTGTTTTTGCTTACTTTCTCCAGATCAAACCACTTGTCCAACCAACCACTAGTATTGTCAACCTTCCATCTCTTGAATATTCGTGGCATTCTTTCATTTCAAAGAACAATAATAATTTATCGACTATAGCTAGCTTATGGGCTCCTGTAGTGGCTCTCTATCTTTTGGACATTTACATATGGTACACACTCTTGTCAGCTATCATTGGTGGTGTAAAGGGTGCTCGGGCTCGGTTGGGTGAGATACGTTCGCTGGAAATGATGAATAAACGTTTTGAGAGCTTTCCAGAAGCATTTGTAAAGAAACTTGTTGCTCCAAATAAGAAAAGTTTGCCACCCGATGGACAAGATTCTCAGGACTCTCCCGATTCAAACAAGACATATGCGGCAACCTTTTCTCCATTTTGGAATGAGATCATTAAAAGTTTACGTGAGGAAGACTTTATTAGCAATAGGGAGATGGACTTGCTCTCTATCCCTAGCAACACTGGGAGTCTCAGATTGGTCCAGTGGCCTTTGTTTCTATTAAGTAGTAAGATATTCTTGGCTGTTGACCTAGCTTTGGATTGCAAAGATACGCAGAAAGATCTATGGAATAGAATATGTCGGGATGAGTACATGGCATATGCAGTTCAAGAATGCTACTACAGTGTTGAAAAAATTCTATATGCCCTTGTCGATGGTGAAGGGAGACTTTGGGTTGAAAGGATTTTTCGGGAGATCTCCAACAGTATTTTAGAGGGTTCACTGGTTATAACATTGAACCTTAAGAAGATTCCATTTGTGTTACAAAAGTTTACTGCGCTTACAGGGCTTTTGACTCGAAAAGAATCTTCTGAACTTGCTAGAGGTGCTGCAAAATCTGTATTTGAGCTTTATGAGGTTGTTTCAGACGTCCTGCTTTCATCAAATTTGAGGGAGCAGCTTGATACATGGAATATCTTGTCGAGGGCAAGAAATGAAGGTCGCCTTTTTTCTCGTATCGAATGGCCCAAGGATCTAGAAATTAAAGAGCTCGTGAAGCGACTGCATCTACTTCTTACAGTGAAGGATTCTGCTGTTAACATTCCTAAAAATCTTGAAGCAAGAAGAAGACTACAATTTTTTGCAAATTCTTTATTTATGGACATGCCTTTGGCAAAACCTGTCTGTGAAATGGTGCCATTCAGCGTTTTTACTCCATACTACAGTGAAACTGTGCTGTATAGTTCCTCTGAAATACGGATAGAAAATGAGGATGGCATATCCATTCTTTTCTATCTTCAGAAGATTTTTCCAGATGAATGGGAGAACTTTTTGGAACGAATTGGTCGAGGTCATGCTACAGGGGAAGCAGAGCTCCAAAAAAGTCCAAGTGATGCTTTGGAGCTCCGATTTTGGGTTTCATATCGAGGTCAAACTCTAGCTCGGACAGTTCGTGGCATGATGTACTACAGGAGAGCTTTAATGCTTCAAAGCTATCTAGAGAAGAGATCATTTGGGGATGATTATTCTCAAACTAACTTTCCCATGAGTCAAGGGTTTGAGTTATCTCGAGAATCAAGGGCACAGGCAGACTTGAAGTTTACCTATGTTGTTTCCTGTCAAATATATGGGCAACAAAAGCAGAGAAAAGCTCCAGAGGCTTCTGATATTGCTCTTTTGCTGCAGAGGAATGAGGGACTTCGTGTTGCTTTCATTCACGTGGAAGATAGCGTTGGATCTGATGGAAAGGTTGTAAAGGAATTTTATTCGAAGCTTGTGAAAGCTGATGTACATGGAAAAGATCAGGAGGTATATTCGATCAAACTTCCTGGAGAACCAAAGCTAGGAGAAGGAAAACCTGAAAACCAAAATCATGCTATAGTTTTCACTCGTGGAGATGCTATTCAAACTATTGACATGAACCAAGACAACTATCTTGAAGAGGCAATGAAAGTGAGAAATCTTCTGGAGGAATTTCATGGAAAGCATGGGCTTCGGCCTCCTACCATCCTTGGCGTGAGAGAGCATGTATTCACGGGAAGTGTCTCTTCATTAGCATGGTTCATGTCCAATCAAGAGACTAGCTTTGTAACCTTAGGACAACGTGTTTTGGCAAGTCCACTCAAAGTTCGTATGCATTATGGGCATCCTGATGTGTTTGACCGTATATTTCATATAACTCGAGGTGGCATTAGCAAGGCATCACGTGTAATCAACATTAGTGAGGATATATATGCAGGTTTCAACTCCACTTTGAGGCAGGGTAACATTACGCACCACGAGTATATTCAGGTTGGAAAAGGAAGGGATGTTGGGTTAAACCAGATTGCCCTGTTTGAGGGGAAAGTAGCAGGTGGGAATGGAGAGCAAGTTCTTAGCAGGGATATTTACAGGCTTGGGCAACTTTTTGATTTCTTCAGAATGCTCTCATTTTATTTCACAACTGTTGGTTACTACGCATGCACAATGATGACAGTTCTCGTGGTTTATATATTCTTGTATGGGCGGGTTTACCTGGCCTTTGCTGGACTTGACGAAGCAATCTCAAGAAGAGCAAAAATGTTGGGAAACACAGCATTGGATACCGCACTGAATGCTCAGTTTTTGTTTCAGATTGGAGTTTTTACCGCAGTTCCTATGATAATGGGTTTTATACTTGAACTTGGACTGCTGAAGGCTGTTTTTAGCTTCATAACTATGCAGCTTCAGTTATGTTCTGTCTTCTTCACGTTCTCTTTGGGGACTAGAACTCATTATTTTGGAAGAACTATTCTCCATGGTGGCGCCAAGTATCGAGCTACTGGTAGAGGTTTTGTGGTCCAACACATCAAATTTGCTGAAAATTATCGGCTCTACTCAAGAAGTCATTTCATCAAGGCGCTTGAGGTGGCATTGCTTCTTATTGTCTACATGGCGTATGGGTATTCAGGAGGAGGTGCAAGTTCTTTTGTTTTGCTTACTCTCAGCAGTTGGTTCCTCGTTATCTCCTGGCTATTTGCTCCTTATATCTTCAATCCATCTGGTTTTGAGTGGCAAAAGACTGTGGAGGATTTTGACGATTGGACTAGCTGGCTATTTTACAAAGGGGGAGTAGGGGTAAAGGGGGAAAGCAGCTGGGAGTCATGGTGGGATGAGGAACAGGCACATATTCAAACATTGCGAGGTCGAATTTTGGAGACGCTTTTGACTTTTAGGTTCTTCATATTTCAATATGGCATTGTGTATAAACTCCATCTTACAGGAAAGGACACATCACTTGCGTTATATGGATTCTCATGGGCAGTGCTCGTTGGTATTGCTTTGATATTTAAGATCTTCACCTTCAGTCCAAAAAAATCGACAAACTTCCAGCTATTGATGAGATTTATTCAGGGTGTCACAGCCATAGTTTTAGTTACAGCCCTTGGTCTAATCGTTGGCTTTACTAACCTGTCGATAACCGACTTATTTGCAAGTATTCTGGCATTTATTCCTACTGGATGGGCCTTGCTATGTTTTGCAGTTACTTGGAAGAAAGTAGTGAGGAGTCTAGGCTTGTGGGACTCAGTGCGTGAATTTGCCAGGATGTATGATGCTGGGATGGGTTTAATCGTATTCGTGCCCATCGCATTCTTGTCCTGGTTTCCATTCATTTCCACGTTCCAGTCTCGTCTTCTCTTCAACCAAGCTTTCAGCCGTGGACTCGAGATCTCGCTCATCCTCGCTGGAAACAAAGCTAATGTCGAGACATACTGA 5721 41.72 MARVNDNWERLVRATLKREQLRNAGRGHGRTSSGIVGAAPPSLGKTTNIDAILHAADEIQAEDSTVARILCEQAYGMAQNLDPNSDGRGVLQFKTGLMSVIKQKLVRKDGASIDRHRDIEHLWEFYKQYKRRHKVDDIQREEQKWRESGVISASLGELELRYSEAKNVIANLRALVEVMDALKGDADPQGVGRLIMEELRRVRSSDTTLSGEFVPYNIVPLDSQSLTNAIGIFPEVRATISAIRYTEHFPRLPSEFQISGQRSADMFDLLEFLFGFQRDNIRNQREHVVLMVANAQSRLGIPDNGDPKIDEKAVNEVFLKVLNNYIKWCKYLRIRLAWNSFEAINRDRKLFLVSLYLLIWGEAANVRFLPECICYLFHHMAKELDAKLDHGEAVPSDNCKLQDGSVSFLQRIICPIYKTIVSETERNKNGKAAHSAWRNYDDFNEYFWSPTCFELGWPMREESSFLQKPRGSKRTGKTSFVEHRTYFHLYRSFHRLWIFLAVIFQALTIFAFHNERLNLDTLKDILSIGPTFAIMNFIESCLDVLLTFGAYTTARGMAISRIVIRFFWWGLSSVFVTYVYVKVLEERNTRSSDNSFYFRIYILVLGVYASLRLVVSMLLKLPACHKLSEMSDQSFFQFFKWIYQERYYVGRGLYEKPSDYCRYVAFWLVLLICKFVFAYFLQIKPLVQPTTSIVNLPSLEYSWHSFISKNNNNLSTIASLWAPVVALYLLDIYIWYTLLSAIIGGVKGARARLGEIRSLEMMNKRFESFPEAFVKKLVAPNKKSLPPDGQDSQDSPDSNKTYAATFSPFWNEIIKSLREEDFISNREMDLLSIPSNTGSLRLVQWPLFLLSSKIFLAVDLALDCKDTQKDLWNRICRDEYMAYAVQECYYSVEKILYALVDGEGRLWVERIFREISNSILEGSLVITLNLKKIPFVLQKFTALTGLLTRKESSELARGAAKSVFELYEVVSDVLLSSNLREQLDTWNILSRARNEGRLFSRIEWPKDLEIKELVKRLHLLLTVKDSAVNIPKNLEARRRLQFFANSLFMDMPLAKPVCEMVPFSVFTPYYSETVLYSSSEIRIENEDGISILFYLQKIFPDEWENFLERIGRGHATGEAELQKSPSDALELRFWVSYRGQTLARTVRGMMYYRRALMLQSYLEKRSFGDDYSQTNFPMSQGFELSRESRAQADLKFTYVVSCQIYGQQKQRKAPEASDIALLLQRNEGLRVAFIHVEDSVGSDGKVVKEFYSKLVKADVHGKDQEVYSIKLPGEPKLGEGKPENQNHAIVFTRGDAIQTIDMNQDNYLEEAMKVRNLLEEFHGKHGLRPPTILGVREHVFTGSVSSLAWFMSNQETSFVTLGQRVLASPLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFYFTTVGYYACTMMTVLVVYIFLYGRVYLAFAGLDEAISRRAKMLGNTALDTALNAQFLFQIGVFTAVPMIMGFILELGLLKAVFSFITMQLQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVQHIKFAENYRLYSRSHFIKALEVALLLIVYMAYGYSGGGASSFVLLTLSSWFLVISWLFAPYIFNPSGFEWQKTVEDFDDWTSWLFYKGGVGVKGESSWESWWDEEQAHIQTLRGRILETLLTFRFFIFQYGIVYKLHLTGKDTSLALYGFSWAVLVGIALIFKIFTFSPKKSTNFQLLMRFIQGVTAIVLVTALGLIVGFTNLSITDLFASILAFIPTGWALLCFAVTWKKVVRSLGLWDSVREFARMYDAGMGLIVFVPIAFLSWFPFISTFQSRLLFNQAFSRGLEISLILAGNKANVETY 1906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 240593 296111 - Sed0027476.1 Sed08g0048 721824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0048 1906 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 41 1900 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Sed08g0048 1906 SMART FKS1_dom1_2 347 460 IPR026899 -
Sed08g0048 1906 Pfam 1,3-beta-glucan synthase component 1030 1798 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
Sed08g0048 1906 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 349 457 IPR026899 -
Sed08g0048 1906 Coils Coil 155 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0048 Sed-Chr8:240593 Sed12g1613 Sed-Chr12:26925605 0.00E+00 dispersed
Sed12g2494 Sed-Chr12:34457289 Sed08g0048 Sed-Chr8:240593 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0048 K11000 - csv:101217890 3585.04