Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0053 | ATGGAAATGAGCATAAGAACAATCAAGAAATCAACAGCAGGCGCCATAATTCTTCTCTCAGTTTTACTTTCTCTACAACAAGTTGTTCCTTTTTCTTTGGCTCTACCTTCTTCACAGACTAATCAGGACGTGGAGCAATCTTCAACTTCGAGACCTCTCGAGCAAGATGAAAAGCATGTTGCTGAAGTACACTGCTCCAGAGAACGAAGTAAAACAGCCTGGAATATTCTCGAGGAGCATTTGCTGCCGTTTATGGAGAAGGAAAATTATCAGGTTTCAACCAAGTGTAGGCTTCATCCAGACAATGATCTCTTCAGAGATCAGGAGCAGCACAAGATTCATCTCGATATAAATCATTGGCAGTGTGGATACTGTCGGAAAAGCTTTCGTGCTGAAAAATTTCTCGATAAGCATTTTGATAGCAGACATTACAATCTTCTGAATGTTAGCCACGGGAAGTGCTTAGCTGATTTATGTGGAGCTTTGCATTGTGACTTAAAGATGGATATCAAGTCACGTAAATCTAAATGCAAACCTGCAGCTGCTGCTAGGAACAAGCATTTATGTGAGACTCTTGCTGATAGCTGTTTTCCAATTAATGAGGGACCATCGGCAAGCCGTCTTCACGAGTTGTTTCATCATCAATTCTGTGAAGCTCATTCTTGCACTGGGAAACAAAAGCCATTTTCTAGAGGAGCTGAGAGGCAACCGGGCATCTTTTACATGGCATCTTCAATATTGATTTTGATGTTGCTGCCCTTTTTCTATGTCATTGTCTATTTACACCGCAGGTACTCTCTTTTACCTTGTTGA | 813 | 41.21 | MEMSIRTIKKSTAGAIILLSVLLSLQQVVPFSLALPSSQTNQDVEQSSTSRPLEQDEKHVAEVHCSRERSKTAWNILEEHLLPFMEKENYQVSTKCRLHPDNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDSRHYNLLNVSHGKCLADLCGALHCDLKMDIKSRKSKCKPAAAARNKHLCETLADSCFPINEGPSASRLHELFHHQFCEAHSCTGKQKPFSRGAERQPGIFYMASSILILMLLPFFYVIVYLHRRYSLLPC | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 317893 | 321509 | + | Sed0017360.2 | Sed08g0053 | 721829 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0053 | 270 | PANTHER | ZINC FINGER PROTEIN-RELATED | 15 | 264 | - | GO:0000976(PANTHER) | |
Sed08g0053 | 270 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 122 | 143 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0053 | Sed-Chr8:317893 | Sed08g1454 | Sed-Chr8:29134933 | 3.20E-82 | dispersed | |
Sed08g0052 | Sed-Chr8:317893 | Sed08g0053 | Sed-Chr8:317893 | 1.70E-153 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39229 | None | None | None | None | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0053 | - | - | - | 0.0 |