Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0053 ATGGAAATGAGCATAAGAACAATCAAGAAATCAACAGCAGGCGCCATAATTCTTCTCTCAGTTTTACTTTCTCTACAACAAGTTGTTCCTTTTTCTTTGGCTCTACCTTCTTCACAGACTAATCAGGACGTGGAGCAATCTTCAACTTCGAGACCTCTCGAGCAAGATGAAAAGCATGTTGCTGAAGTACACTGCTCCAGAGAACGAAGTAAAACAGCCTGGAATATTCTCGAGGAGCATTTGCTGCCGTTTATGGAGAAGGAAAATTATCAGGTTTCAACCAAGTGTAGGCTTCATCCAGACAATGATCTCTTCAGAGATCAGGAGCAGCACAAGATTCATCTCGATATAAATCATTGGCAGTGTGGATACTGTCGGAAAAGCTTTCGTGCTGAAAAATTTCTCGATAAGCATTTTGATAGCAGACATTACAATCTTCTGAATGTTAGCCACGGGAAGTGCTTAGCTGATTTATGTGGAGCTTTGCATTGTGACTTAAAGATGGATATCAAGTCACGTAAATCTAAATGCAAACCTGCAGCTGCTGCTAGGAACAAGCATTTATGTGAGACTCTTGCTGATAGCTGTTTTCCAATTAATGAGGGACCATCGGCAAGCCGTCTTCACGAGTTGTTTCATCATCAATTCTGTGAAGCTCATTCTTGCACTGGGAAACAAAAGCCATTTTCTAGAGGAGCTGAGAGGCAACCGGGCATCTTTTACATGGCATCTTCAATATTGATTTTGATGTTGCTGCCCTTTTTCTATGTCATTGTCTATTTACACCGCAGGTACTCTCTTTTACCTTGTTGA 813 41.21 MEMSIRTIKKSTAGAIILLSVLLSLQQVVPFSLALPSSQTNQDVEQSSTSRPLEQDEKHVAEVHCSRERSKTAWNILEEHLLPFMEKENYQVSTKCRLHPDNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDSRHYNLLNVSHGKCLADLCGALHCDLKMDIKSRKSKCKPAAAARNKHLCETLADSCFPINEGPSASRLHELFHHQFCEAHSCTGKQKPFSRGAERQPGIFYMASSILILMLLPFFYVIVYLHRRYSLLPC 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 317893 321509 + Sed0017360.2 Sed08g0053 721829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0053 270 PANTHER ZINC FINGER PROTEIN-RELATED 15 264 - GO:0000976(PANTHER)
Sed08g0053 270 ProSitePatterns Zinc finger C2H2 type domain signature. 122 143 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0053 Sed-Chr8:317893 Sed08g1454 Sed-Chr8:29134933 3.20E-82 dispersed
Sed08g0052 Sed-Chr8:317893 Sed08g0053 Sed-Chr8:317893 1.70E-153 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39229 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0053 - - - 0.0