Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0057 ATGGCGTCAACTACACTCTCCCTCTCCTCAGCTTCGATTTCCACTTCTAAAACCCCTCCCCTTCCAAATTCCACCATTGCAGCTGCTCATTTCAAACCCCATTCTGCAAATCTGTCCAAATCCCTTGCGGGCAAGAGGATAAGTTCGAATCGATCCTCAAGAACCAACCAAATCGGCGATAAGAACGCTTCTAATCGGATCCATTGCCAGGCCTCTTCTTCTTCTTCTTCTTCTGTTCTTCCCTCTGCCCTTCTTTTCGATTGCGATGGGGTTCTCGTCGATACTGAAAAGGATGGCCATCGCATTTCCTTCAATGACACTTTTCAAGAGAAAGAATTGGGCGTGACATGGGATGTAGATTTGTATGGTGAGTTACTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCGTACTTCAACAAAGTTGGATGGCCAGAAAATGCTCCAAAGGGTGAAGATGAGAGAAAGACATTCATAGCTGGACTTCACAAGCGAAAGACTGATTTGTTCATGGCTCTTATCGAGAAGCAATTACTACCCCTTCGCCCTGGTGTTGCAAAGCTAATTGATCAGGCATTAGCAAAAGGAGTGAAAGTTGCTGTTTGTAGCACTTCCAATGAGAAGGCGGTCTCTGCGATAGTATCATTTTTACTGGGACCTCAACGAGCTGAGCAGATCAAGATATTTGCAGGAGATGTAGTTCCTCGAAAGAAGCCTGACCCAGTAAGATTTCGAACCCACTCAAGTGTTGATTGCTAA 759 45.06 MASTTLSLSSASISTSKTPPLPNSTIAAAHFKPHSANLSKSLAGKRISSNRSSRTNQIGDKNASNRIHCQASSSSSSSVLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVTWDVDLYGELLKIGGGKERMTAYFNKVGWPENAPKGEDERKTFIAGLHKRKTDLFMALIEKQLLPLRPGVAKLIDQALAKGVKVAVCSTSNEKAVSAIVSFLLGPQRAEQIKIFAGDVVPRKKPDPVRFRTHSSVDC 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 329041 334032 + Sed0019566.2 Sed08g0057 721833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0057 252 MobiDBLite consensus disorder prediction 1 21 - -
Sed08g0057 252 PANTHER XYLULOSE-1,5-BISPHOSPHATE (XUBP) PHOSPHATASE 37 242 IPR044999 GO:0016787(InterPro)
Sed08g0057 252 Gene3D Putative phosphatase; domain 2 95 175 IPR023198 -
Sed08g0057 252 SUPERFAMILY HAD-like 82 245 IPR036412 -
Sed08g0057 252 MobiDBLite consensus disorder prediction 42 63 - -
Sed08g0057 252 Pfam haloacid dehalogenase-like hydrolase 83 244 - -
Sed08g0057 252 Gene3D - 176 247 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0057 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0057 Sed-Chr8:329041 Sed10g0850 Sed-Chr10:6346512 4.40E-25 dispersed
Sed08g0056 Sed-Chr8:329041 Sed08g0057 Sed-Chr8:329041 9.50E-129 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g885 . . Bda06g00630 . . . . Bma12g01067 . . . Cma11g00055 . Car11g00049 Sed08g0057 . Cpe04g01597 Bhi02g00571 Tan09g2336 Cmetu02g1589 . Hepe09g0075 . . Cla06g01719 Cam06g1909 Cec06g1959 Cco06g1963 Clacu06g1865 Cmu06g1807 Cre06g2622 . . Cone13ag0201 Cone19ag0189 . . . . . Blo15g00238 . . Bpe07g00870 . . . . . Cmo11g00057 . . . . . . . . . . . . . . . . . . . . Lsi06g01613 Csa01g00083 Chy02g02637 Cme02g02036
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009837 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33