Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0061 ATGATGATGTCCCCAAACGATGCGATCAAGCACGCTCTCAGGGCGCTTCGCCATCGCCATCTCCTCGAAGAAGCCGCCCATGCTCCCGCTTTTCAAGCTCTCTCTCGCCCCATCCTATCCCAGAGTTCGGAATGGAAGGAAAAGGCTGAGAACCTGGAGTTGGAGCTTCAGCAGTGTTACAAGGCTCAATCACGATTGTCTGAGCAACTTGTGGTTGAAGTGGCCGAGTGTCGAGCTTCTAAGTCTTTGATTGAGGAGAAAGATGCCACAATTGAGAATTTGCAGCAGGAGTTAACTCGAGCCAGGGATGAATGCTCCCAGTTAAAGCAAGACTTGGAGATGAAAATGAAAGCAATGGAACTGGCTTTATGTGAGAACCAAGAAATGAAAGCACAACTTGAAGCAATGACTGTTAAAGCTAAGAATGCAGAGGCTGAAAATAAGATGTTGGTTGATAGATGGATGCTTCAAAAGATGCAGGACGCAGAACGCCTCAATGAGGCGAATGCACTCTATGAAGACATGGTTGATCGACTCAAGGCTAGTGGATTAGAGAAACTTGCTCAGCAACAGGTCGATGGGGTGGTCCGTCAAAGTGAAGAGGGTGCTGAATACTTCGTCGAATCCACTGTACCCTCTGTGTGCAAGCATAGGATTCGTGCCCATGAAGGGGGCTGTGGTACTATAATGTTTGAACATAATTCAGGAAAGTTGATCAGTGGGGGGCAGGACCGAACAGTCAAATTGTGGGATACAAATACTGGAACACTAAGTTCCACTCTACATGGGTGCCTTGGTTCTGTTCTTGATCTTGCAATTACCCATGACAATAGATCTGTCATTGCAGCCAGCAGTTCAAACAACTTATATGTATGGGATGTTGGTTCTGGAAGGGTGCGTCATACGCTTACCGGTCACTCGGACAAAGTATGTGCCGTCGATGTAAGCAAAATTTCCACCCGCCATGTTGTGAGTGCTGCTTATGATCGTACCATCAAAATTTGGGATTTACAGAAGGGTTACTGCACCAAGACTCTCATTTTCCACAGCAATTGCAATGCAGTTTGCTTCAGCATGGATGGACAGACCATTTGTTCTGGCCATGTGGATGGAAATCTTCGGTTGTGGGATATTCAAACAGGAAAATTGCTTAGTGAAGTAGCTGGCCACTCCCTTGCTGTTACATCTCTTTCTTTGTCACGTAATGGCAATACAATATTGACAAGTGGGAGAGATAACTTGCATAATTTATTCGATATTCGATCCTTGGAAGTCTGCGGGACATTACGAGCGTCTGGGAACCGTGTAGCTTCCAACTGGAGTCGTTCTTGCATCAGTCCAGATGACAACCATGTTGCTGCAGGTTCCGCAGATGGATCTGTCCATGTCTGGTCAATATCGAAACACGATATTGTGAGCACCCTGAAAGAGCACACTGCATCTGTTCTGTGTTGTTCATGGAGTGGGCTTGGAAAACCCCTAGCATCCGCAGACAGAAATGGAATAATATTCACATGGAATTGA 1524 46.19 MMMSPNDAIKHALRALRHRHLLEEAAHAPAFQALSRPILSQSSEWKEKAENLELELQQCYKAQSRLSEQLVVEVAECRASKSLIEEKDATIENLQQELTRARDECSQLKQDLEMKMKAMELALCENQEMKAQLEAMTVKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMVDRLKASGLEKLAQQQVDGVVRQSEEGAEYFVESTVPSVCKHRIRAHEGGCGTIMFEHNSGKLISGGQDRTVKLWDTNTGTLSSTLHGCLGSVLDLAITHDNRSVIAASSSNNLYVWDVGSGRVRHTLTGHSDKVCAVDVSKISTRHVVSAAYDRTIKIWDLQKGYCTKTLIFHSNCNAVCFSMDGQTICSGHVDGNLRLWDIQTGKLLSEVAGHSLAVTSLSLSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVHVWSISKHDIVSTLKEHTASVLCCSWSGLGKPLASADRNGIIFTWN 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 347060 349560 - Sed0016445.1 Sed08g0061 721837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0061 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 260 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 Pfam WD domain, G-beta repeat 444 465 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 Pfam WD domain, G-beta repeat 472 507 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 Pfam WD domain, G-beta repeat 298 336 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 Pfam WD domain, G-beta repeat 381 414 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 Pfam WD domain, G-beta repeat 214 251 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 Pfam WD domain, G-beta repeat 340 377 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 255 - -
Sed08g0061 507 Coils Coil 162 182 - -
Sed08g0061 507 CDD Atg16_CCD 81 169 - -
Sed08g0061 507 ProSitePatterns Trp-Asp (WD) repeats signature. 323 337 IPR019775 -
Sed08g0061 507 ProSitePatterns Trp-Asp (WD) repeats signature. 364 378 IPR019775 -
Sed08g0061 507 Gene3D - 207 350 IPR015943 GO:0005515(InterPro)
Sed08g0061 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 474 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 Gene3D - 81 155 - -
Sed08g0061 507 Pfam Autophagy protein 16 (ATG16) 40 166 IPR013923 -
Sed08g0061 507 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 340 - -
Sed08g0061 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 422 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 CDD WD40 215 507 - -
Sed08g0061 507 Gene3D - 351 507 IPR015943 GO:0005515(InterPro)
Sed08g0061 507 Coils Coil 77 153 - -
Sed08g0061 507 FunFam Autophagy-related protein 16 203 507 - -
Sed08g0061 507 SMART WD40_4 212 251 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 SMART WD40_4 296 336 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 SMART WD40_4 339 377 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 SMART WD40_4 254 293 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 SMART WD40_4 468 507 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 SMART WD40_4 422 465 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 SMART WD40_4 380 419 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 Coils Coil 42 69 - -
Sed08g0061 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 302 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 475 507 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 345 IPR001680 GO:0005515(InterPro)
Sed08g0061 507 ProSitePatterns Trp-Asp (WD) repeats signature. 238 252 IPR019775 -
Sed08g0061 507 PRINTS G protein beta WD-40 repeat signature 364 378 IPR020472 -
Sed08g0061 507 PRINTS G protein beta WD-40 repeat signature 238 252 IPR020472 -
Sed08g0061 507 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Sed08g0061 507 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 475 507 - -
Sed08g0061 507 SUPERFAMILY WD40 repeat-like 211 507 IPR036322 GO:0005515(InterPro)
Sed08g0061 507 PANTHER AUTOPHAGY PROTEIN 16-LIKE 8 506 IPR045160 GO:0000045(InterPro)|GO:0000045(PANTHER)|GO:0000421(PANTHER)
Sed08g0061 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 386 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0061 K17890 - - csv:101219308 916.376
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32