Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0064 ATGGCATCCCTTTCATCCAAACTCCTTCCCTTCTTCGCCTTTCTCTCTCTCCTTCTCCATGTCCATGCCCGATTAACCCTTCATCCCTCAGATCTCACAGCCTTCAATCTCATCTACCATGACTTAGCCATTCACCCTCAACTCCCCTCCTCCCCATGCGACCTCGCCGGCGTCCTCTGCGAGCGCCGCCGCCTCTCCGGCGAAGCCAATTATGTATTGAGAATCACCAGGCTCATTTTCAACTCAAAGGGTCTCACCGGCTCTCTTTCTCCCGCCATTGGTCGGCTCTCCGAGTTGAAAGAGCTTACGGTTTCAAACAACCACCTCGTTGACCAACTACCACCCCAGATCGTTGACTGCCGGAAACTGGAGATTCTCGATCTCCAAAACAACCAGTTTTCCGGCAAAGTCCCATCTGGGTTATCCGCGTTGATTCGTCTTCGAGTGATCGATCTCTCATCCAATAAATTCTCCGGAAGTTTGGATTTCTTGAAGCATTTCCCCAACTTGGAAACTCTCTCCATAGCCAACAATTACTTCACTGGTAAGATCCCACCTTCAATCCGCTCTTTTCGCAATCTTCGTGCCTTTAACTTCACTGGAAATCGCCTACTCGAAAGCTCTAATCCTATCGTGAGAGGCGTCGAGTTCAACTCGGCTACCGACGTCCCCAAGCGTTACAAGTTGACTGAGAATTCCACTGCAAAAGGCCCTTCCACCGCCCCCGCAGCGGCGCCGACTGTGAGTGCTCAAGCTCCATCGCCTGCAGCATCTCCTCATAAGCATAACAAGAGTAAAGCAAAGAAGGTAATTTCATGGATACTTGGATTGCTCGCTGGAGCCATTGCTGGAAGTTTGTCAGGGTTTATCTTCTCTCTACTGTTTAAGATCGTTGTAGCAGCTATAAAAGGTGGAAGCAAGAACACGGGTCCTTCCATCTTTGCTCCTAAGCTAATAAAACGAGAGGATTTGAGTTTTCTAGAGAAAGAAGATGCGCTTGCTTCACTTGAGCTGATTGGGAAAGGTGGATGTGGAGAGGTTTACAAGGCGGAATTACCAGAAAACAGCGGGAAAATGTTTGCTATAAAGAAGATAACTCAACCCCCAAAAGAAGCTGCTGAGTTAGCTGATGAGGATAGCAGGTTTATGAGCAACAAAATGCGCCAGATCAGGTCAGAGATTAGAACTGTGGGTGAAATCCGGCACAGGAATCTTTTACCTCTTGTGGCTCATGTCCTACGTCCTGATTGCCATTACCTTGTGTATGAATTGATGAAGAATGGAAGCTTGCAGGATATGTTGAATCAAGTTTCTGCAGGAGTGAAAGAACTAGATTGGCTTACTAGACATAATATTGCTCTTGGAGTGGCATCTGGGTTGGAGTATCTTCACATGAACCATACCCCACGGATTATTCATAGAGATCTGAAGCCTGCAAATGTTTTGCTTGATGACCACATGGAAGCTCGAATTGCTGATTTTGGCCTGGCCAAAGCAATGCCAGATGCTCAAACTCACATGACGGCTTCGAAAGTTGCCGGTACTGTGGGATACATAGCACCTGAGTATCATCAGACCTTGAAGTTCACTGATAAGTGTGATATATACGGGTTTGGGGTTCTGCTAGGTGTGTTGGTGATTGGAAAGCTTCCATCTGATGAGTTTTTCCAGGACACGGATGAGATGAGTTTGATTAGGTGGATGAGGAATGTTATGACTTCGGATAGTCCTAGGAGGGCCATTGATCCGAAGCTTCTGGGAAATGGCTGGGAGGAACAAATGCTCTTGGCTCTCAAAATTGCCTGCTTTTGCACTGTGGAAAATCCAAAAGAGAGACCTAACAGTAAGGACGTTAGATGTATGCTGTCACAGATCAAGCATGATGTACCTGAAACTCCCTCTTCCGCGAATGTCTAA 1917 47.05 MASLSSKLLPFFAFLSLLLHVHARLTLHPSDLTAFNLIYHDLAIHPQLPSSPCDLAGVLCERRRLSGEANYVLRITRLIFNSKGLTGSLSPAIGRLSELKELTVSNNHLVDQLPPQIVDCRKLEILDLQNNQFSGKVPSGLSALIRLRVIDLSSNKFSGSLDFLKHFPNLETLSIANNYFTGKIPPSIRSFRNLRAFNFTGNRLLESSNPIVRGVEFNSATDVPKRYKLTENSTAKGPSTAPAAAPTVSAQAPSPAASPHKHNKSKAKKVISWILGLLAGAIAGSLSGFIFSLLFKIVVAAIKGGSKNTGPSIFAPKLIKREDLSFLEKEDALASLELIGKGGCGEVYKAELPENSGKMFAIKKITQPPKEAAELADEDSRFMSNKMRQIRSEIRTVGEIRHRNLLPLVAHVLRPDCHYLVYELMKNGSLQDMLNQVSAGVKELDWLTRHNIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDHMEARIADFGLAKAMPDAQTHMTASKVAGTVGYIAPEYHQTLKFTDKCDIYGFGVLLGVLVIGKLPSDEFFQDTDEMSLIRWMRNVMTSDSPRRAIDPKLLGNGWEEQMLLALKIACFCTVENPKERPNSKDVRCMLSQIKHDVPETPSSANV 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 361210 363126 - Sed0026149.1 Sed08g0064 721840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0064 638 ProSiteProfiles Protein kinase domain profile. 333 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0064 638 SMART serkin_6 333 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0064 638 Gene3D Ribonuclease Inhibitor 161 214 IPR032675 -
Sed08g0064 638 MobiDBLite consensus disorder prediction 232 258 - -
Sed08g0064 638 SUPERFAMILY Protein kinase-like (PK-like) 331 626 IPR011009 -
Sed08g0064 638 MobiDBLite consensus disorder prediction 232 263 - -
Sed08g0064 638 Gene3D Ribonuclease Inhibitor 41 160 IPR032675 -
Sed08g0064 638 FunFam Leucine-rich repeat receptor-like protein kinase 425 632 - -
Sed08g0064 638 Gene3D Phosphorylase Kinase; domain 1 322 424 - -
Sed08g0064 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0064 638 SUPERFAMILY L domain-like 28 207 - -
Sed08g0064 638 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515(InterPro)
Sed08g0064 638 Pfam Protein kinase domain 336 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0064 638 FunFam Leucine-rich repeat receptor protein kinase EMS1 68 164 - -
Sed08g0064 638 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 255 627 IPR051564 GO:0016020(PANTHER)
Sed08g0064 638 Gene3D Transferase(Phosphotransferase) domain 1 425 635 - -
Sed08g0064 638 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0064 Sed-Chr8:361210 Sed05g1525 Sed-Chr5:28939541 2.30E-54 dispersed
Sed09g0333 Sed-Chr9:3034453 Sed08g0064 Sed-Chr8:361210 5.70E-37 dispersed
Sed08g0064 Sed-Chr8:361210 Sed01g4261 Sed-Chr1:70902482 3.20E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79576 PF00069 Pkinase 1.20E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0064 - - - 0.0