Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0071 ATGGCTTCCACTTCAGTCAATTCCCTTTTGAAATCCTTACCTAAATCAGATTATTCCTTACTTTCCTTGCCCTCTGTTTTCCCCTTCAGACCCCCAAATTCATTCCTCTCTTTCCCTTCCAAATTCATCCCATTTCAACTCTCTTCTTCACATTCTTCACTCTTTTTATCCTCCAAGAACAAAACCCATCTTTCTTCTTTACTCGTCTCTGTAGCCCAAGAAGATGACACCATCACCATTGACCAGAAGCTTGGCAGCGACGAAGATGGAGGACCCCATTGGGAAAATCAAGAGCTTAGTGAGAATGAATCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGGCGAAGAAGAAGCCGAGGCCGTCGAAGAAGAAGAAGGGTCTTATGTTGAACCCAATGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATGTTGATAGTCAGAAACTTGCAATGCTGTTTGAGAAGGCTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGACCGGAGTCGTGGTTTTGGGTTTGTGACTATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTTGATACATTCAACAGATATGATTTATCAGGGAGGTTGTTGACTGTTAATAAGGCTGCCCCAAGAGGTTCAAGGCCAGAACGCGCACCTCAAACATTTGAATCCGCTTGCAGAATCTATGTGGGTAATCTTCCATGGGATGTAGACAACGCACGCCTGGAACAGGTTTTCAGTGAACATGGTAAAGTAGTAGAGGCTCGGGTTCTTTACGACCGAGACAGCGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGAAATGAACGATGCCATTGCTGCTCTGGACGGACAGAGTATAGATGGAAGAGCAATCAGAGTAAATGTTGCAGAGGAAAAACCAGGGCGCAACTTCTGA 945 44.55 MASTSVNSLLKSLPKSDYSLLSLPSVFPFRPPNSFLSFPSKFIPFQLSSSHSSLFLSSKNKTHLSSLLVSVAQEDDTITIDQKLGSDEDGGPHWENQELSENESRISDWEGEGEGEEEAEAVEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPQTFESACRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETEMNDAIAALDGQSIDGRAIRVNVAEEKPGRNF 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 375199 377854 - Sed0023054.1 Sed08g0071 721847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0071 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 308 IPR000504 GO:0003723(InterPro)
Sed08g0071 314 SUPERFAMILY RNA-binding domain, RBD 223 312 IPR035979 GO:0003676(InterPro)
Sed08g0071 314 Gene3D - 73 218 IPR012677 -
Sed08g0071 314 Gene3D - 219 313 IPR012677 -
Sed08g0071 314 PANTHER OS02G0815200 PROTEIN 62 311 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Sed08g0071 314 Pfam RNA recognition motif 232 302 IPR000504 GO:0003723(InterPro)
Sed08g0071 314 Pfam RNA recognition motif 138 207 IPR000504 GO:0003723(InterPro)
Sed08g0071 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723(InterPro)
Sed08g0071 314 FunFam 31 kDa ribonucleoprotein, chloroplastic 220 314 - -
Sed08g0071 314 MobiDBLite consensus disorder prediction 110 129 - -
Sed08g0071 314 SUPERFAMILY RNA-binding domain, RBD 132 222 IPR035979 GO:0003676(InterPro)
Sed08g0071 314 FunFam 31 kDa ribonucleoprotein, chloroplastic 68 219 - -
Sed08g0071 314 SMART rrm1_1 137 210 IPR000504 GO:0003723(InterPro)
Sed08g0071 314 SMART rrm1_1 231 304 IPR000504 GO:0003723(InterPro)
Sed08g0071 314 MobiDBLite consensus disorder prediction 82 109 - -
Sed08g0071 314 CDD RRM2_NsCP33_like 231 306 IPR048289 -
Sed08g0071 314 MobiDBLite consensus disorder prediction 82 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0071 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0646 Sed-Chr2:44258284 Sed08g0071 Sed-Chr8:375199 1.40E-48 dispersed
Sed04g1364 Sed-Chr4:28007368 Sed08g0071 Sed-Chr8:375199 1.40E-48 dispersed
Sed08g0071 Sed-Chr8:375199 Sed12g0438 Sed-Chr12:2649892 1.10E-36 dispersed
Sed12g2487 Sed-Chr12:34427998 Sed08g0071 Sed-Chr8:375199 8.50E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35