Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0078 ATGGAACGCCGACGACCCCCGTCACTTCCACTTCACCGCTTCACCTTCTTCCTCATCTTTTCCCACTCATACGCCGTCGATTTCATCTTCAATTCCTTCACCAACAGCACCAACAACACCGACATAATCCTCATCAGCGACGCCAGATTCGATTCCCCTGTAATCCGCCTCAACAACGACTCGAACCCACTCTCAATTGGCCGAGCTTTCTACCACACAAAGCTGTCCATGAAACCCACTTCGAATTCCTCTGTAATTTCTTCTTTTTCAACTTCTTTCGTCTTCTCCATCTTGCTCGAAGTCGCTACAAGTCCAGGGTTCGGTTTAGCCTTTGTTCTGTCCAACACAACTTCCCCTGTTGGCGCCTTGGCCAGCCAATTCTTCGGTCTCTTCTCAAACTCCACAACCCATGTCGTTGCTCCGCTTCTCGCCGTCGAATTCGACACCGGAAGAAACACGGAGTTTAACGACCCTGATGATAGCCATATCGGAATCGATTTGAACAGCATGATTTCGATTAAAACGCAGAGTGCTGGGTATTTTGATTCTAGTGGGAAATTTGTACCGATTCAGATGAGAAATGGGCAAAACCTTCGCGCTTGGATCGAATTCGACGGACGCAATTTCGAAATCAACGTCACAATCGCCCCAGTTGAAATCCCTCGTCCTTCCAGACCCATTTTGAGTTTTAGAGATCCTGTAATGGCGGATTATATATCGTCTGAAATGTTTGTGGGATTTTCAGCATCGAAAACGCAATGGGTTGAAGCACAGAGGATTTTCGCTTGGAGTTTTAGTGACACCGGCGCTGCTAGAGAGATTAACGTTACCGATTTTCCGGTGTTTTTGAGAGAATCGCCGCCGTCTTCGTTGTCGCCGGGATCTGTTGCAGGTATTGTAATTGGGTGTGTTTTGTTTATCGTAATTTCTGGATTTGGGGGTTTTTGGTATTGGCGAAAAAACAGAGTAAATGAAGACGATGAAGTTGAGGATTGGGAACTCGAATATTGGCCTCACAGATTCTCTAACGAGGAGCTTTCAACGGCCACCGATGGATTTTCCGATCAAAATCTGTTGGGTGTCGGCGGATTTGGAAGGGTTTTTAAAGGAACTTTATCAAACAACACGGAAATCGCCGTCAAGTGTGTAAATCACGATTCAAAACAGGGGTTAAAGGAATTCATGGCTGAAATATCGAGTATGGGCAGGCTTCAACATAAGAATCTTGTTCAATTGCGAGGATGGTGTCGAAAACGGAATGAATTGATGTTGGTTTATGATTATATGCCGAATGGAAGCCTTAATCGGTGGATTTTCGACAAGCCCACGACGGTGCTCGGCTGGAAACAGCGCCGCCGTGTGCTCGCCGACGTTGCAGAGGGTTTGAACTATCTCCACCATGGTTGGGACCAGGTGGTAATTCATAGAGACATAAAATCGAGCAATGTGTTGTTGGATTCGGAAATGAGAGGCAGAGTCGGCGATTTCGGGTTGGCGAAGCTGTACCAACACGGCGAGACCCCGAACACCACACGGGTTGTTGGGACATTGGGGTATTTGGCACCGGAGATTGCAACGGTGGCTGTTCCTACGGCGGCTAGCGACGTGTATAGTTTTGGGGTCGTGGTTCTTGAAGTGGTGTGTGGGCGGCGGCCAATTGAGTTGGCTGCTGAGGAGGAAGAGATAGTGCTCATTGATTGGGTCGGGGAACTTTACGCCGCCGAACGAATAATTGCTGCGGCAGACTCGAGAATTAGAGGTGAGTATGAAGTTGAAGAAATGGAGTTGATGATGAAGCTTGGTTTGGCTTGTTGTCATCCTGACCCTACACGCCGGCCAACGATGAGGGAGGTAATGGTGGTGTTGATCGGAGAACAGCCAGCTGCCGATGTGGCCGAGACTTTGTCGTCGGGATTGACACGCCGCGTGGTTGATGGTGGAGAAGTTGACTTGTGA 1956 48.42 MERRRPPSLPLHRFTFFLIFSHSYAVDFIFNSFTNSTNNTDIILISDARFDSPVIRLNNDSNPLSIGRAFYHTKLSMKPTSNSSVISSFSTSFVFSILLEVATSPGFGLAFVLSNTTSPVGALASQFFGLFSNSTTHVVAPLLAVEFDTGRNTEFNDPDDSHIGIDLNSMISIKTQSAGYFDSSGKFVPIQMRNGQNLRAWIEFDGRNFEINVTIAPVEIPRPSRPILSFRDPVMADYISSEMFVGFSASKTQWVEAQRIFAWSFSDTGAAREINVTDFPVFLRESPPSSLSPGSVAGIVIGCVLFIVISGFGGFWYWRKNRVNEDDEVEDWELEYWPHRFSNEELSTATDGFSDQNLLGVGGFGRVFKGTLSNNTEIAVKCVNHDSKQGLKEFMAEISSMGRLQHKNLVQLRGWCRKRNELMLVYDYMPNGSLNRWIFDKPTTVLGWKQRRRVLADVAEGLNYLHHGWDQVVIHRDIKSSNVLLDSEMRGRVGDFGLAKLYQHGETPNTTRVVGTLGYLAPEIATVAVPTAASDVYSFGVVVLEVVCGRRPIELAAEEEEIVLIDWVGELYAAERIIAAADSRIRGEYEVEEMELMMKLGLACCHPDPTRRPTMREVMVVLIGEQPAADVAETLSSGLTRRVVDGGEVDL 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 423906 425861 + Sed0020407.1 Sed08g0078 721854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0078 651 Gene3D - 24 279 - -
Sed08g0078 651 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 283 IPR013320 -
Sed08g0078 651 Gene3D Phosphorylase Kinase; domain 1 317 428 - -
Sed08g0078 651 FunFam L-type lectin-domain containing receptor kinase S.4 429 635 - -
Sed08g0078 651 Pfam Legume lectin domain 26 276 IPR001220 GO:0030246(InterPro)
Sed08g0078 651 Gene3D Transferase(Phosphotransferase) domain 1 429 637 - -
Sed08g0078 651 CDD lectin_legume_LecRK_Arcelin_ConA 26 269 IPR001220 GO:0030246(InterPro)
Sed08g0078 651 ProSiteProfiles Protein kinase domain profile. 353 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0078 651 SMART serkin_6 353 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0078 651 PANTHER - 47 626 IPR050528 GO:0005886(PANTHER)
Sed08g0078 651 FunFam L-type lectin-domain containing receptor kinase S.1 338 428 - -
Sed08g0078 651 CDD STKc_IRAK 359 618 - -
Sed08g0078 651 ProSitePatterns Legume lectins beta-chain signature. 143 149 IPR019825 -
Sed08g0078 651 Pfam Protein kinase domain 355 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0078 651 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524(InterPro)
Sed08g0078 651 FunFam L-type lectin-domain containing receptor kinase S.4 24 273 - -
Sed08g0078 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0078 651 SUPERFAMILY Protein kinase-like (PK-like) 330 622 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3367 Sed-Chr4:43710659 Sed08g0078 Sed-Chr8:423906 6.00E-125 dispersed
Sed08g0078 Sed-Chr8:423906 Sed14g0524 Sed-Chr14:5196773 2.60E-125 dispersed
Sed08g0078 Sed-Chr8:423906 Sed08g2265 Sed-Chr8:36246975 8.20E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79577 PF00069 Pkinase 8.80E-52 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0078 - - - 0.0