Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0079 ATGCACAGAAAGGCAACATCTGTTCTTCTTGTTGCTACCAAAGTTTTGATGATTCTATTATGTGCTGTTTGGGTTTCTCTTTGGCTCTTGAATCCTACTGATCTCTGGACAAGAAAATGGCATCTTGCTGAAAACAAAGCCAGAGCCTCTGTGTTTGGATACTTTGGTCTCAATTTTGTTGTGTATACTTTTCCTTTGATTGCTCTGGTTGTGGTTGGACTGGTTTACTTGAGTATCAAACCCTCTAAGCCAAAAATTTGCAGGGAAACAAAGTTCTCAAACTTTGGCAATGTTATGTCAAACCCACTTGTTGTGAACAGTTATTTGGGTGTTTTATCAGGAATTGAGCTTTTGGGTGTTGGCTTGTTTCTGCTCTTCCTTGCTTGGACGTTCTATGCTCGGATTTCTAAGGATTTCAGAAAGTTGGTGATTGATGAATCACTTAACTTGAAGATATGGGAACTCAAGTATTTTAGAATAGCCACCAGGTTTGGCTTGCTGGCTGAGGCCTGTTTGGGGCTGCTTCTTCTGCCTATCTTAAGAGGGTTGGCTCCATTTAGGCTAATTGGCATTCAATTTGAAGCTTCTGTCAAATATCACATCTGGCTTGGCACTGCAATGGTGTTATTCGCCACCTTCCACGGCGCAAGCACCTTGTTCATTTGGGGGCTCAGCAATCAGATTCAAGATCAGGTGTGGAAATGGCAGAAAACCGGTCGGATTTATATTGCCGGAGAGATCACTTTGATTACAGGATTAGTGATTTGGATCACTTCCTTGCCTCAGATTAGGAGGAGAAATTTTGAGATCTTCTACTACACACACCATTTGTACATTGTGTTCTTTGTGTTCTTCTTGTTTCATGCTGGAGATAGACACTTCTACATGGTATTTCCTGGATTGTTTCTCTTTGGCATCGATAAGATTCTCAGGATTATTCAATCTAGAACTGAAACTTGTGTCGTCTCTGCTCGAATTCTCCCTTGCAAAGCTGTGGAGCTAACTCTGCCAAAAGATCAGAGGCTGAAGTATAAACCAACTAGTGTTGTGTATGTGAAGATACCAAGGATTTCCAGATTTCAGTGGCATGCTTTCAGTTTGATTTCCAGCTCGAGCGTTGATGATGACACAATGACGATTGTTGTTAAATGTGACAAGTCGTGGACGAGATCTTTGTATGAGATGATAAGTACCGGACGTGAGGGAGAGTCGGGTCAGTTGAAGTGCATATCTGTTGCGGTTGAAGGCCCTTATGGACCTGCCTCCATGGACTTTCTAAGATATGATCACTTGCTTCTGATTGCTGGAGGAATTGGAGTAACCCCGCTTTTGAGTATTTTGCAGGAGATCACTTCAGTACAGTACAGCCAAAAATTTGGACGCCCTGCAAGAATACAGCTTATACATGTCATGAAGAAGTCGCACGACATTTCGCTACTCAACTCGATCTTACCATTACTACTGAACCGCTCGGACGAAAAAGTGTATTTGCAGCTCAAAGTATTTGTAACACAAGAAGTGCAATCTGGTTTAACTGTAACAGAACTGCTACACAAGTTGTCTCAAGTGCAGACTATACAATCGAGCACGAAATGTTTGAGCTATGCAGCACGAGGACTTGAAAGCTTGGGCTGGATGGCTGCAATTACTGGACTTACATCAGCCGTGTTCGTCATCGCCTTAATCTTCTTCAACCATATTGTTGTTCCAACCGAGAAAGCCACCAAAAAGATGAGAGATTCAAAAAAGATGAAAGATCGAACTCCATCATCGATCTCTGATCTACTTTTGATATCTTCCTTTGCTTTAGCCATCTTGTGCGGGGCAGTCGTCGGGATTGTTTTAAGACGAAGAAAACAAAACAAAGAAAATCTATCACTCATCCAAAGTCAAAAGCAAAACCAAAATTTATTTCCAAGTTCAGCAGCAAGAGCAAGTATACAGGAAGAACATGAAATACATTTTGGACTAAGGCCAAACTTCAAAGAGATATTCTCCGACTTTCAAAATGAAGTGTGCGAATCCGACATCGGCGTGATCAGCTGTGGACCGGAGTCGATGAACATGTCGATAGCACTGGCATGTAAACAAATGTCTCAAGGTGCAAGAAAAGGCTCAAAGAAGAACAAACAGCTATTCAGTTTTCATTCTCTCAACTTCACACTCTGA 2169 41.82 MHRKATSVLLVATKVLMILLCAVWVSLWLLNPTDLWTRKWHLAENKARASVFGYFGLNFVVYTFPLIALVVVGLVYLSIKPSKPKICRETKFSNFGNVMSNPLVVNSYLGVLSGIELLGVGLFLLFLAWTFYARISKDFRKLVIDESLNLKIWELKYFRIATRFGLLAEACLGLLLLPILRGLAPFRLIGIQFEASVKYHIWLGTAMVLFATFHGASTLFIWGLSNQIQDQVWKWQKTGRIYIAGEITLITGLVIWITSLPQIRRRNFEIFYYTHHLYIVFFVFFLFHAGDRHFYMVFPGLFLFGIDKILRIIQSRTETCVVSARILPCKAVELTLPKDQRLKYKPTSVVYVKIPRISRFQWHAFSLISSSSVDDDTMTIVVKCDKSWTRSLYEMISTGREGESGQLKCISVAVEGPYGPASMDFLRYDHLLLIAGGIGVTPLLSILQEITSVQYSQKFGRPARIQLIHVMKKSHDISLLNSILPLLLNRSDEKVYLQLKVFVTQEVQSGLTVTELLHKLSQVQTIQSSTKCLSYAARGLESLGWMAAITGLTSAVFVIALIFFNHIVVPTEKATKKMRDSKKMKDRTPSSISDLLLISSFALAILCGAVVGIVLRRRKQNKENLSLIQSQKQNQNLFPSSAARASIQEEHEIHFGLRPNFKEIFSDFQNEVCESDIGVISCGPESMNMSIALACKQMSQGARKGSKKNKQLFSFHSLNFTL 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 426249 429569 - Sed0027604.1 Sed08g0079 721855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0079 722 PANTHER NADPH OXIDASE 25 720 IPR050369 GO:0000293(PANTHER)|GO:0005886(PANTHER)
Sed08g0079 722 Pfam Ferric reductase like transmembrane component 164 285 IPR013130 -
Sed08g0079 722 PRINTS Cytochrome B-245 heavy chain signature 243 266 IPR000778 GO:0016020(InterPro)|GO:0016491(InterPro)
Sed08g0079 722 PRINTS Cytochrome B-245 heavy chain signature 268 288 IPR000778 GO:0016020(InterPro)|GO:0016491(InterPro)
Sed08g0079 722 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 314 424 IPR017927 GO:0016491(InterPro)
Sed08g0079 722 Gene3D - 608 720 IPR039261 -
Sed08g0079 722 Gene3D - 412 542 IPR039261 -
Sed08g0079 722 Pfam Ferric reductase NAD binding domain 428 692 IPR013121 GO:0016491(InterPro)
Sed08g0079 722 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 412 487 IPR039261 -
Sed08g0079 722 CDD NOX_Duox_like_FAD_NADP 321 477 - -
Sed08g0079 722 SFLD Ferric Reductase Domain 35 722 - -
Sed08g0079 722 SFLD Ferric reductase subgroup (FRE) 12 721 - -
Sed08g0079 722 Pfam FAD-binding domain 321 422 IPR013112 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0079 K00521 - - csv:101203723 1110.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0079 Sed-Chr8:426249 Sed13g0145 Sed-Chr13:948663 4.90E-85 dispersed
Sed08g0079 Sed-Chr8:426249 Sed08g0267 Sed-Chr8:1584318 1.20E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g745 . . . . Bpe03g00148 . . Bma14g02049 Cmo16g00114 . . . . . Sed08g0079 . Cpe14g00091 Bhi01g01266 Tan01g0209 Cmetu10g1511 . Hepe07g0132 Mch10g0135 . . . . . . . . Cone1ag1183 . . . Lsi05g01204 . . . Blo07g00388 . . . . Bpe12g00441 . . . . . Cma16g00106 . . . . . . . . . . . . . . . . . . . . Csa03g01738 Chy06g00969 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011006 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31