Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0088 ATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAATTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCCCCTTATTTCCCACCAGAAGAGCCTCAAAAATTTGCCAATGTGCACAAGATCTTTGGTGCAAGCAATGTGACCAAGCTGCTCAATGAACTTCTCCCTCACCAAAGAGAGGATGCAGTCAACTCTCTAGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAGCTCGACGCTGCGAACACCGACCTGATTCGGTTCGCATGCAACGAGATCCCTAATGCAGGAGCCAGTCATGTGGTTCAGCCGATCCCGAGGGCTTTCGATCAGTACACTTCGAGAATTCTCGGGAATGAAGGGTCGTCGAGTGGATATTATAATCAACATCTCCCTGCTTTCCCCATGGTTTATCCACTTCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATCAAGGTGGAGGGGAAGGCAATAACATTTGA 561 49.02 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLIRFACNEIPNAGASHVVQPIPRAFDQYTSRILGNEGSSSGYYNQHLPAFPMVYPLPWNENSSGNNINQGGGEGNNI 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 496474 499109 + Sed0019557.1 Sed08g0088 721864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0088 186 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Sed08g0088 186 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Sed08g0088 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 120 - -
Sed08g0088 186 Coils Coil 89 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0520 Sed-Chr6:4546939 Sed08g0088 Sed-Chr8:496474 9.20E-55 dispersed
Sed08g0088 Sed-Chr8:496474 Sed08g1405 Sed-Chr8:28698955 3.60E-48 dispersed
Sed01g1628 Sed-Chr1:11844777 Sed08g0088 Sed-Chr8:496474 6.40E-37 wgd
Sed12g2463 Sed-Chr12:34257423 Sed08g0088 Sed-Chr8:496474 3.50E-88 wgd
Sed08g0088 Sed-Chr8:496474 Sed08g2530 Sed-Chr8:38024923 1.60E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39234 PF03195 LOB 2.80E-42 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0088 - - - 0.0