Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0088 | ATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAATTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCCCCTTATTTCCCACCAGAAGAGCCTCAAAAATTTGCCAATGTGCACAAGATCTTTGGTGCAAGCAATGTGACCAAGCTGCTCAATGAACTTCTCCCTCACCAAAGAGAGGATGCAGTCAACTCTCTAGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAGCTCGACGCTGCGAACACCGACCTGATTCGGTTCGCATGCAACGAGATCCCTAATGCAGGAGCCAGTCATGTGGTTCAGCCGATCCCGAGGGCTTTCGATCAGTACACTTCGAGAATTCTCGGGAATGAAGGGTCGTCGAGTGGATATTATAATCAACATCTCCCTGCTTTCCCCATGGTTTATCCACTTCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATCAAGGTGGAGGGGAAGGCAATAACATTTGA | 561 | 49.02 | MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLIRFACNEIPNAGASHVVQPIPRAFDQYTSRILGNEGSSSGYYNQHLPAFPMVYPLPWNENSSGNNINQGGGEGNNI | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 496474 | 499109 | + | Sed0019557.1 | Sed08g0088 | 721864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0088 | 186 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 106 | IPR004883 | - | |
Sed08g0088 | 186 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Sed08g0088 | 186 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 120 | - | - | |
Sed08g0088 | 186 | Coils | Coil | 89 | 116 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0520 | Sed-Chr6:4546939 | Sed08g0088 | Sed-Chr8:496474 | 9.20E-55 | dispersed | |
Sed08g0088 | Sed-Chr8:496474 | Sed08g1405 | Sed-Chr8:28698955 | 3.60E-48 | dispersed | |
Sed01g1628 | Sed-Chr1:11844777 | Sed08g0088 | Sed-Chr8:496474 | 6.40E-37 | wgd | |
Sed12g2463 | Sed-Chr12:34257423 | Sed08g0088 | Sed-Chr8:496474 | 3.50E-88 | wgd | |
Sed08g0088 | Sed-Chr8:496474 | Sed08g2530 | Sed-Chr8:38024923 | 1.60E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39234 | PF03195 | LOB | 2.80E-42 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0088 | - | - | - | 0.0 |