Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0096 ATGCCTGTAAATTCATGGACCCTCTTTTCATCTATCCCAATCCTCTGTTTCTCAGTCTTATTTTCATTTCCTTTCACAATTTCCGCCATTAATGAACAGGGTCAAGCTCTACTCTCTTGGAAGCTAAGTTTGAACGATTCAAATGGGGAGCTAAGAAATTGGGACCCCAACAACGAAACTCCATGTGGGTGGCTTGGAATCAATTGCAACAGAAACAGACAAGTAGTGGAAATAGTTTTGAGGAATGTGAACTTACCCGGTAAGGTTCCATGGAATTTCTCCTCGTTGTTGTCTCTGAACAAGCTCGTCTTGTCGGGATTGAATCTCACTGGCTCCATTCCTAAAGAGATCGGTGTTCTCACCCAGCTGAGGATCTTGGAAGTCAGTGACAATGGCTTGAGTGGAGAAATTCCTACTGAGATAGGTTCCTTGATGAATCTTGAACAGCTTTGTCTCAATTCAAATCTTCTTGAAGGGTTCATCCCTGAATGGATCGGGAATCTCACGAACTTGAAGGAGTTGATTCTCTATGACAATCAATTAAGTGGGGAAATTCCAATTAGCATAGGGAATTTGAAGCGGATTGAAGTGATTAGAGCTGGAGGAAACAAGAACTTACATGGTTCTTTGCCGGATGAAATTGGTAACTGCAGTAGTTTAGTGATTCTTGGGCTAGCTGAAACAAGCATCTCCGGCGTAATTCCGGCGAGCCTTGGCCTTCTTAAGAATCTTCGGACATTGGCAATCTATACATCTCTTCTCTCCGGTCAGATTCCTCAGGAACTTGGCGACTGTATTGAGCTTCAGAATCTCTATCTCTACGAGAACTCGATCTCCGGCTCGATCCCGAGCTCGTTAGGAAAGTTGCAGAATCTTCAAAGTCTTCTTCTATGGCAGAACAATTTGGTTGGTGTTATACCGCCGGAGCTAGGTAGATGTGGCCAGTTAATAGTCATCGACGTATCTATCAATTCACTGACCGGAAACATTCCTTCAACATTTGGGGATTTGACAATGCTACAAGAATTGCAACTGAGTTCAAATCAATTATCAGGTGAGATTCCTAAGGAGATTGCAAACTGTTCTGGAATCACTCACATCGAGCTTGATAATAATCAACTCATTGGAACAATTCCCTCTGAATTAGGAAATCTCACCAATCTCACATTGCTGTTCTTGTGGCAAAACAATCTCGAGGGAAGTATTCCATCCACCATTTCCAATTGTCGTAATCTCGAAGCTGTGGATTTATCGCTCAACGCCTTGACTGGTTCGATTCCGACGGGGTTTTTTCAGTTGAAGAAGCTTTCAAAGCTTTTGCTCCTCTCCAACAATCTCTCCGGCGAGATTCTGCCGGCGATTGGTAACTGTTCGTCTCTGTTTCGGTTCCGAGCGAGTAACAACAAGCTAACGGGGAGAATCCCGCCGGAGATTGGGAATTTGAAGAACTTAGTGTTTTTAGATCTCGGAAACAACCGCCTCTCTGAAGCGTTGCCGCCGGAGATTTCTGGATGCAGAAATTTGACATTCATTGATTTGCATTCCAATTCTCTAACGAAATTTCTTCCACAAGAACTCAACCAGCTTTCTTTGCTTCAGTTTGTTGATCTTTCCAACAACCTATTCGAAGGAACGCCCATTCCGAGTTTTGGATCTTTCAACTCGCTCACGAAACTCGTTCTCTCAAACAATCGCTTCTCAGGATCCATTCCGATTGAAATCGGTTCTTGCTCGAAACTACAGTTACTGGATTTAAGTTGCAATCAACTCTCAGGAAACATTCCGGCGAGTTTAGGTAAGATTCCTACCCTAGAAATTGGTCTCAATCTGAGCTTAAACAACCTAACCGGCGAGATTCCACCGGAGTTTGCAAATCTAGACAAGCTCGGCTCATTGGATCTATCTTACAACCAACTCTCTGGCGATCTCCACATTCTCGCAGAACTGCAAAATCTCGTAGTTCTCAATGTATCACACAACAGTTTCACAGGACGCGTACCAGAGACGCCATTCTTCGCTCAGCTTCCTCTAATCGTCCTCTCCGGAAACCCTAACTTGTGTTTCGCCGGCGAAAAATGCTACGCCGACGACCACGGCGGCGCTCACCACACGCTAGCCGCTCGAGTCGCCATGATTGTACTACTCTGCACGGCGTGCGCACTGCTGCTAGCCGCAGTTTACATCGTTTTCAAAGATCGACATTCATGTCGAGGATGCTTCAATAGGTCCGGCAGCAAAGATCCAGACGCCGCCTTCGACAGCGACCTGGAGCTCGGCTCAGGCTGGGAAGTAACACTCTACCAGAAACTCGACCTCTCCATCTCCGACGTAATCAAGAGCATAACGCCGGCGAACATCATCGGCCGCGGAAAAACCGGCGTGGTGTACAGAGCGAACATCTCATCAGGTCTAATCATCGCCGTGAAGCGGTTCCGATCGTCGGAAAAGTACTCGGCGGCGGCGTTCTCGTCGGAAATCGCAACATTGGCGAGGATCCGCCACCGGAACATCGTGCGATTGCTAGGGTGGGGGGCGAATCGGAGAACGAAACTGCTGTTCTACGATTACTTGCCGAATGGGAATTTGGGCGCGTTGCTACACGAGGGGAGTGGGCGCGTGGGGTTGGATTGGGAGTGTAGGTATAAAATAGCGTTGGGAGTGGCGGAGGGATTGGCTTATTTGCACCACGATTGCGTGCCGGCGATACTGCACCGGGACGTGAAGGCTCACAATATTCTGTTGGGTGATCGTTACCAGCCGTGTTTGGCGGACTTTGGGCTCGCTCGGCTGGTTGATGACGGTCCGACCGGTTCGTCTTCTTCGAACCCTCAGTTCGCTGGCTCTTACGGCTATTTTGCGCCTGAATACGGTTGCATGTTAAGGATTACAGAAAAGAGTGACGTATATAGCTATGGGGTCGTTTTATTAGAGATAATAACAGGAAAAAAACCAGCAGACTCTTCTTTCCGAGAGGGACAACATGTGATCCAATGGGTGAGAGAACATTTACAAAAAAAGAAAGATCCAGTTTTAATTTTGGATTCGAAACTTCAAGGTCAACCCGACTCCCAGATCCAAGAGATTCTACAGGCATTAGGAATCTCCCTACTTTGCACTAGCGACCGTGCCGACGACCGACCGACTATGAAAGACATCGCAGCTCTTTTACGAGAGATCCGACCCGACCAACCTTCGTCGGCAGCGGAGGCCATCGACAAGCCGCCACGAAATAAGAGCAACACAACAAACTTGGATAAAGCAACGTTGTTTTCTTCCTCCTCTTCTACTGCTCCTACGAGTCATTTGCTTTTTACGCTGCCCCTTCCAGATTCGTCATGTTGCTCTTATGCTTCACTGTCTTCGTCAAGCATGTATTTTCCACCCAATCAGTAA 3393 47.04 MPVNSWTLFSSIPILCFSVLFSFPFTISAINEQGQALLSWKLSLNDSNGELRNWDPNNETPCGWLGINCNRNRQVVEIVLRNVNLPGKVPWNFSSLLSLNKLVLSGLNLTGSIPKEIGVLTQLRILEVSDNGLSGEIPTEIGSLMNLEQLCLNSNLLEGFIPEWIGNLTNLKELILYDNQLSGEIPISIGNLKRIEVIRAGGNKNLHGSLPDEIGNCSSLVILGLAETSISGVIPASLGLLKNLRTLAIYTSLLSGQIPQELGDCIELQNLYLYENSISGSIPSSLGKLQNLQSLLLWQNNLVGVIPPELGRCGQLIVIDVSINSLTGNIPSTFGDLTMLQELQLSSNQLSGEIPKEIANCSGITHIELDNNQLIGTIPSELGNLTNLTLLFLWQNNLEGSIPSTISNCRNLEAVDLSLNALTGSIPTGFFQLKKLSKLLLLSNNLSGEILPAIGNCSSLFRFRASNNKLTGRIPPEIGNLKNLVFLDLGNNRLSEALPPEISGCRNLTFIDLHSNSLTKFLPQELNQLSLLQFVDLSNNLFEGTPIPSFGSFNSLTKLVLSNNRFSGSIPIEIGSCSKLQLLDLSCNQLSGNIPASLGKIPTLEIGLNLSLNNLTGEIPPEFANLDKLGSLDLSYNQLSGDLHILAELQNLVVLNVSHNSFTGRVPETPFFAQLPLIVLSGNPNLCFAGEKCYADDHGGAHHTLAARVAMIVLLCTACALLLAAVYIVFKDRHSCRGCFNRSGSKDPDAAFDSDLELGSGWEVTLYQKLDLSISDVIKSITPANIIGRGKTGVVYRANISSGLIIAVKRFRSSEKYSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGSGRVGLDWECRYKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYQPCLADFGLARLVDDGPTGSSSSNPQFAGSYGYFAPEYGCMLRITEKSDVYSYGVVLLEIITGKKPADSSFREGQHVIQWVREHLQKKKDPVLILDSKLQGQPDSQIQEILQALGISLLCTSDRADDRPTMKDIAALLREIRPDQPSSAAEAIDKPPRNKSNTTNLDKATLFSSSSSTAPTSHLLFTLPLPDSSCCSYASLSSSSMYFPPNQ 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 577454 583473 + Sed0003199.1 Sed08g0096 721872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0096 1130 Pfam Protein kinase domain 785 1052 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 555 577 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 461 481 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 483 505 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 532 552 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 268 289 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 291 313 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 579 600 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 387 409 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 Pfam Leucine Rich Repeat 608 626 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0096 1130 Gene3D Ribonuclease Inhibitor 364 432 IPR032675 -
Sed08g0096 1130 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 857 1073 - -
Sed08g0096 1130 ProSiteProfiles Protein kinase domain profile. 781 1056 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0096 1130 Gene3D Ribonuclease Inhibitor 433 694 IPR032675 -
Sed08g0096 1130 ProSitePatterns Protein kinases ATP-binding region signature. 787 809 IPR017441 GO:0005524(InterPro)
Sed08g0096 1130 SMART LRR_typ_2 529 552 IPR003591 -
Sed08g0096 1130 SMART LRR_typ_2 649 673 IPR003591 -
Sed08g0096 1130 SMART LRR_typ_2 481 505 IPR003591 -
Sed08g0096 1130 SMART LRR_typ_2 385 409 IPR003591 -
Sed08g0096 1130 SMART LRR_typ_2 553 577 IPR003591 -
Sed08g0096 1130 SMART LRR_typ_2 168 192 IPR003591 -
Sed08g0096 1130 SMART LRR_typ_2 120 144 IPR003591 -
Sed08g0096 1130 SMART LRR_typ_2 289 313 IPR003591 -
Sed08g0096 1130 SMART LRR_typ_2 337 361 IPR003591 -
Sed08g0096 1130 Gene3D Ribonuclease Inhibitor 285 363 IPR032675 -
Sed08g0096 1130 FunFam Nuclear pore complex protein NUP107 30 187 - -
Sed08g0096 1130 FunFam Putative LRR receptor-like serine/threonine-protein kinase 607 692 - -
Sed08g0096 1130 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Sed08g0096 1130 Gene3D Ribonuclease Inhibitor 30 185 IPR032675 -
Sed08g0096 1130 Gene3D Phosphorylase Kinase; domain 1 764 856 - -
Sed08g0096 1130 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 428 522 - -
Sed08g0096 1130 SUPERFAMILY Protein kinase-like (PK-like) 772 1056 IPR011009 -
Sed08g0096 1130 Pfam Leucine rich repeat 317 374 IPR001611 GO:0005515(InterPro)
Sed08g0096 1130 SUPERFAMILY L domain-like 58 308 - -
Sed08g0096 1130 Gene3D Ribonuclease Inhibitor 186 284 IPR032675 -
Sed08g0096 1130 MobiDBLite consensus disorder prediction 1063 1083 - -
Sed08g0096 1130 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 204 427 - -
Sed08g0096 1130 Gene3D Transferase(Phosphotransferase) domain 1 857 1082 - -
Sed08g0096 1130 SMART serkin_6 781 1076 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0096 1130 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 451 1057 IPR051716 -
Sed08g0096 1130 SMART LRR_sd22_2 626 651 - -
Sed08g0096 1130 SMART LRR_sd22_2 385 414 - -
Sed08g0096 1130 SMART LRR_sd22_2 337 363 - -
Sed08g0096 1130 SMART LRR_sd22_2 168 194 - -
Sed08g0096 1130 SMART LRR_sd22_2 481 500 - -
Sed08g0096 1130 SMART LRR_sd22_2 120 149 - -
Sed08g0096 1130 SUPERFAMILY RNI-like 270 640 - -
Sed08g0096 1130 ProSiteProfiles Leucine-rich repeat profile. 628 650 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2764 Sed-Chr7:42677235 Sed08g0096 Sed-Chr8:577454 1.60E-89 dispersed
Sed08g0096 Sed-Chr8:577454 Sed12g0413 Sed-Chr12:2490362 2.90E-100 dispersed
Sed01g1631 Sed-Chr1:11874397 Sed08g0096 Sed-Chr8:577454 5.70E-138 wgd
Sed12g2458 Sed-Chr12:34202758 Sed08g0096 Sed-Chr8:577454 5.40E-248 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79578 PF00069 Pkinase 3.00E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0096 - - - 0.0