Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0103 ATGTTGAGTGGAGAAAGAAGGTGGACATCAGCAAGACGAGGTGGGATGACTGTTTTAGGAAAGGTTGCAGTTCCAAAACCTATTAACTTACCAAGTCAAAGGTTAGAAAATCATGGTTTGGACCCTAATGTGGAAATTGTACCCAAGGGTACTCTCAGTTGGGGCAATAAATCAACTTCATCTGCAACAAATGCATGGGGCTCCTTATCCGTTTCTCCTAATACAGATAGTGCTTCTGGTTCACCACACCATCTCTGTGGTCGCCCTTCATCTGCTGGTGGCACTCGCCCATCAACTGCTGGTAGTGACAAGTCCCATGAACCTCTTAATGCATGGGGCCCAAATTCTAGACCATCATCTGCCTCTGGGCCTGGGACGTTAAGTCATGCACCACTCACATCCTTACGCCCTCACAGTGCTGAAACTCAATCTAGTAGCTCACAACTGTCACGATTTGCAGAGACTTCTGAAAATCCAGGGGCATGGAATTCTGTTGTGACTACAGAGAAAGTGGGAAAGATGCCATGTAAGAGTGATGGGTTTTCTTTGACATCTGGAGATTTTCCTACGCTGGGTTCTGAAAAAGAATGTGTAGGAAAGGATGCGGAATCACAAGATAACGGGTCCAATGGAGGAGCTATAATAAAAGAGAGGACTGGAACTTTGGCAATTGATGATCCTAAAAATGTAACTTCAAATGTTGCAAGTAATAATTCCTGGAGAAGTGATAGTCTTCCACACAACGATGATGGATCTAGGCCAAATGTAGAGAAATGGCTGGGGCATCCCCAACCTTACCCTGGTGTAAATATTCCTCCCCCACATTATGATGCCTGGCATGGTTCTCCAGTAAACAATCCTCAAGGTGGTGTATGGTTTAGAGGTCCTCCACAAGGAGGTCCTCCATATAGAACTCCAGTTGCTCCTGGTAATTTCCCTATGGATCCATATATGTATTATCCTCCACAGATTCACCCTGGTGGTCTTCCCAATCCCCAGCCTCCTCTTGGAACTGGACCCAGGGCACACCATCCTAAAACTGGAGATGTATTCAGACCTCCTATGCATGATGGTTTTGTACACTCGGGTGTGTCGATTAGACCTGGATTTTTCCCGGGTCCAGTTACCTATGAGGGATATTTCCGTCCTCCCATGGGGTATGGCAATTCAAATGATAGAGATGTTCCATTTATGGGAATGCCTGCTGGGCTTTCTGGGCCTCCCGTTTACAACAGGTACTTGGGCCAAGACCAGAGTGTCTCTGAGCCTGCAAGTTCCCATGACTTATCCAGTGTACATGGTTCTAGTGGAAAGGCTCTGGTTCCAGAACAAGTAGAATCTGGCATTCCTTGTGATAATCAAGGACCATACAAGGTTCTTCTGAAGCAGCAGGAAAGCTTAATTGGGAAAAACGAAGAAGAAAATAGGGTAAACTCAACAAAGACTAATCAGTTGATTCTTGAGAAAGTTGACCAACAGAGGGTGTCTCCACAGGAGAATGACTGGGATCATAAAAAGGAAGTTGATGTGAAGAGAAGAACATTTGGAGTGGAAACCTATTCTCAGGCTTCTGCCAACCATGGAGCTCAGTTGTCTGAAAATATCAAAGCGAAGACTCATGGAAGCACAAGGACTGGTGATGGCTTACTAGAAAAATCGGATTCTGCTGCTTCTGGTTTTTCTGAAGTTCCCAAATCACTGGCCACTGCCACAAAAGATGCAAGTCTGATTCAGAAGATAGAGGGACTAAATGCCAAAGCCCGAGCTTCTGATGTACGACATGATGTTGCACCTATTTCCAGCCGGGTGGAGCCAAATGAATTTAAATCTAACGATAAGCACTCTGATCATTTTGTTGCCCATGAAGCTTGTGCGAGTACCGTTCTCTCTGAAAATAGGGATTTTAATGAAGTCATAGACCCAGCCTCCAGTGTACTGAACGCTTCTACTGGTGATAGGAACGTTAAATTATACAGTAGAGCACCTGTCAACAGGAGGCCTAGTCGTGGAATGCAAGGAAGAAGTGATCATCATAGTCGAGGAAATGTCAATACACAGGATGTTAATAGGTGGCATAAAAGAACCATGTTGGACTCCCCCGGCCTGTTGGCTACTCCCAACCAGGAAAGCTCTGCTCTTGCAAGAGACCACAATGCTGTAGGGGCTAGTGATAAGGCCAAGTCATTTTCTTCTGATAGTCACGTGGATGTATCTGCCCCATCCGTAGGTGATTCTAATGATAGCCAAGCTCAGCGTACAAAGATGAGAGAGCTAGCAAAGCAACGCACCAAACAACTGCAGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAAGGCTAGGGCCTTGGCGAAACTTGAAGAGTTGAACAGGCGTGCAGTAGTAGAGGAGGGGCCAACTCAGTGTTCCGAAAATGCTTCTAATGATGCCATAAGAAATAAGATAGAAGAACCTCAAAATCTTGTTAACCCAATAACTTTTGGTACTATATCTAAAGTGCACACCTCAGGTTCTGATCTACTCATGGTTGTTAACAATAGGCAGTCAACTACGGGTAATAAAAATTCTCTCATCGTATCAGGAGATACATCATTGAAGAAACCAAGTAGCGACGATAAGGAACAAGTTGTGCCACCTATTCAATCGAGACCTTCGGAGCAGGAGGTAACTATTTCGGATGCAGCTCAAAGTAAGAATGCCTCTGAGGTAAGTGGAGGCAGTGCATCCTCGAAGCACAAGCGTGCAGGAAGTAAACAAAAACTAAATATTCCATCAGAAAAGGCTGAAAAGCTTCCTCATTCTATCAAGGAATCAAAAGATCAGACCATCGTTGCTGACGGTCATACAGTTGTAGAAGAGTCGAACAATGTCATTACAGATTCTGTTGCTGAATCTTCCGCACCTACAAGAAAGAAAAACAACAAGAGTGGGAAGAACAAGCACAAAGTGGAAGAGGCCTTAATATCTACATCATCACCTCAGGTTTCAAAAGAAGCGAATCTTACAATGGAATATGATAAGCCAACTGCTACTCAATTGGTAATTGATCCACCATCAGATCCAGTTAATAGTGATGAAAATCAGTTCAGAGAGCAGCTACCTCTGTTTCCAGTTGTAGAGACTCTTGGCAAAGGTAATGTTCAGTGGAAGTCTCAGCACTCTCGCAGGATGCCAAGAAATGCACCGAATAGACCAGGAGAAAAGATCCAAGGCAGTGATTCTGTTGTCTGGGCTCCTGTCCGATCTCTTAACAAATGCGAGCTTATCAATGAAGCTGTTCAGAAGAATGAAGTTGAGACGGTTGCTCCATCTGTAAAGATTGATAATCAAGTGCAGAATACTCCAAAAAATAAGCGAGCTGAAAGGGAGATATATGTACCGAAGCCAGTAGCCAAAGAGATGGCGCAACAAGGAAACATCCATCAAGATATTTTACCAATGAACCAGACACCAGATGACAGTAAGGCAGATTCTAGCCCTCAGAGTTCTGATAATACTCGATCTAATGCCGCCGTTTCTGGTAATATGGGTTGTCCCACAGATCACAGAAACGGGGATGGTAGGCACCATAAACAAAGCAAGGCACATGCCTCATGGCGGCAACGGGGAGCAATGGATTATGCGCATGGCTTGCCAGATCAATCATCTTATATTTCAAATGCTGGTAGTTCTGCTCTAAAACCAAGTGAATATCAAGTATCAGAGAAGGCTGCAGGAACCTCCACCAATGAGTTCACGAGTCAGATTGACGAGTGGGATCCGCCTGAAGGGTGGAATGATCCCAACTACTCAGCCTCTATCCCACCCGTCACTACAGCTGTTGGAAGAGACCAGGGAGTGTCAGGTAGGGGAAAGCAATCCCAATATAAGCACAAGGGTGTAAGGAACAATTATGATCTAAATGAAAGGAAACCTAGAAGTGGAGACAACGAAAAAATTTCTACTGAAGCTTCGGTGCCGGAGGTGGATCAAAAGGATGTATCTGCTGCTGCTAAAGAAAATCGGGGTGTTGGGGAACATTCAACATCACATTGGCAACCCAAATCACGAATGGTTCAACCCCAGAGTCATCAATTGGGAGATAAGAAAACATCTTCCCATAACGAGCGTCCTTACTCCCCAAATCAAGGTCCAATCCACACAATTGAGGTTGCTTCAGCACATACAGATGTGAGACATGAGCAACAGTTGCCTTCATTTTACCATAAAGGTAGTGAGAACCATAACCGCTTTGGAAGAGGGCCAGAATCTCGTCGGGAAAGGAACCCTTCCTCTCAACATCATAAGCAACACTATCCACCTGCTAACAGAGACAGGCAACGACAAAATATGCAGTACGAGTACCAACCAGTTGGGTCACACAACGGAAAACCAAACATGGATAGGCCTAAGGATAACACTCAGCATTCAGGATCAAGGTACGTAGAGAGGGGTCAAGGTCAATCCAGAAGAGATGGTGGGAACTTTTACAACCAAGAAGGTGGATCCGTTTGA 4491 44.82 MLSGERRWTSARRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSLSVSPNTDSASGSPHHLCGRPSSAGGTRPSTAGSDKSHEPLNAWGPNSRPSSASGPGTLSHAPLTSLRPHSAETQSSSSQLSRFAETSENPGAWNSVVTTEKVGKMPCKSDGFSLTSGDFPTLGSEKECVGKDAESQDNGSNGGAIIKERTGTLAIDDPKNVTSNVASNNSWRSDSLPHNDDGSRPNVEKWLGHPQPYPGVNIPPPHYDAWHGSPVNNPQGGVWFRGPPQGGPPYRTPVAPGNFPMDPYMYYPPQIHPGGLPNPQPPLGTGPRAHHPKTGDVFRPPMHDGFVHSGVSIRPGFFPGPVTYEGYFRPPMGYGNSNDRDVPFMGMPAGLSGPPVYNRYLGQDQSVSEPASSHDLSSVHGSSGKALVPEQVESGIPCDNQGPYKVLLKQQESLIGKNEEENRVNSTKTNQLILEKVDQQRVSPQENDWDHKKEVDVKRRTFGVETYSQASANHGAQLSENIKAKTHGSTRTGDGLLEKSDSAASGFSEVPKSLATATKDASLIQKIEGLNAKARASDVRHDVAPISSRVEPNEFKSNDKHSDHFVAHEACASTVLSENRDFNEVIDPASSVLNASTGDRNVKLYSRAPVNRRPSRGMQGRSDHHSRGNVNTQDVNRWHKRTMLDSPGLLATPNQESSALARDHNAVGASDKAKSFSSDSHVDVSAPSVGDSNDSQAQRTKMRELAKQRTKQLQEEEEERTRKQKARALAKLEELNRRAVVEEGPTQCSENASNDAIRNKIEEPQNLVNPITFGTISKVHTSGSDLLMVVNNRQSTTGNKNSLIVSGDTSLKKPSSDDKEQVVPPIQSRPSEQEVTISDAAQSKNASEVSGGSASSKHKRAGSKQKLNIPSEKAEKLPHSIKESKDQTIVADGHTVVEESNNVITDSVAESSAPTRKKNNKSGKNKHKVEEALISTSSPQVSKEANLTMEYDKPTATQLVIDPPSDPVNSDENQFREQLPLFPVVETLGKGNVQWKSQHSRRMPRNAPNRPGEKIQGSDSVVWAPVRSLNKCELINEAVQKNEVETVAPSVKIDNQVQNTPKNKRAEREIYVPKPVAKEMAQQGNIHQDILPMNQTPDDSKADSSPQSSDNTRSNAAVSGNMGCPTDHRNGDGRHHKQSKAHASWRQRGAMDYAHGLPDQSSYISNAGSSALKPSEYQVSEKAAGTSTNEFTSQIDEWDPPEGWNDPNYSASIPPVTTAVGRDQGVSGRGKQSQYKHKGVRNNYDLNERKPRSGDNEKISTEASVPEVDQKDVSAAAKENRGVGEHSTSHWQPKSRMVQPQSHQLGDKKTSSHNERPYSPNQGPIHTIEVASAHTDVRHEQQLPSFYHKGSENHNRFGRGPESRRERNPSSQHHKQHYPPANRDRQRQNMQYEYQPVGSHNGKPNMDRPKDNTQHSGSRYVERGQGQSRRDGGNFYNQEGGSV 1496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 629056 639075 + Sed0016557.2 Sed08g0103 721879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0103 1496 MobiDBLite consensus disorder prediction 65 166 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 1405 1435 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 112 165 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 953 997 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 724 749 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 418 433 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 1228 1496 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 879 911 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 418 438 - -
Sed08g0103 1496 Pfam BAT2 N-terminus 10 126 IPR009738 -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 953 971 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 1143 1174 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 850 940 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 1143 1199 - -
Sed08g0103 1496 Coils Coil 752 791 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 537 558 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 1294 1318 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 656 778 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 225 245 - -
Sed08g0103 1496 CDD UDM1_RNF168_RNF169-like 749 791 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 1228 1248 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 224 265 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 750 778 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 918 940 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 1339 1360 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 1436 1451 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 328 349 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 850 864 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 65 81 - -
Sed08g0103 1496 MobiDBLite consensus disorder prediction 1050 1069 - -
Sed08g0103 1496 PANTHER PROTEIN MODIFIER OF SNC1 1 1360 1490 IPR038808 GO:0040029(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0103 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0103 Sed-Chr8:629056 Sed12g2450 Sed-Chr12:34169864 0.00E+00 dispersed
Sed08g0102 Sed-Chr8:629056 Sed08g0103 Sed-Chr8:629056 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39