Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0112 ATGACTGTAAGCAACGGTTCCTTCTCTGCTCCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGCGAACGAGTTGCCGGAGAAGATATTCAGGATGTTGATACCATATCTGCAATCGGATTCGATAAGACTGGTGATAACCTTGCGATTGGCGATCGAGGTGGTCGTGTTATTATATTCGAAAGAAATGACGGCAAGGATACTTTAAAAAACCTCCATACTCGGAATAAGTTGGAGCAGTTGAATCTTACTCCCGTATGTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGACCCGGAGTTTGATTACTTGAAGAGTTTGGAAATTCCAGAGAAGATTAATAAATTAAAGTGGTGTGTTTCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGACAAGACTATTAAACTATGGAAGGTCAAGGAGCAAAAGGTGAAAAATATCAAAGAGATGAACCCCAATCAATTTGTGAGTTCCGAGAATGCGCTTTTAGCGGAAAATAGTTTCACTAGCGAACAAGACAAGTTATCTCTTACAAATGGCTGCCATTTGGATTGGTCAGAGAATATGGCAATGAACAAGGTAGCATCTAAAGACATTCATGACATGATTGCTGATCTAGACAACACTTCTCGTAGAAGATGCCAAAGGGTTTATGGTCATGCTCATGATTTTAATATTAACTCCATTTCCAACAATAGTGATGGTGAAACATTTATTTCTGCAGACGACTTGCGAATAAACTTATGGAACCTCGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACAGAGATCATAACGTCGGCTGAATTCCATCCCCTGCACTGTAATCTTCTTGCATACAGCAGCTCTAGGGGTTTAATTCGTCTAGTGGACATGCGCCAGTCTGCATTATGTGATCATACTGCAATTCTATTACGAGCTGAAGAGTTGAGTCGACCAAAATCATTTTTCACAGAGATTATATCATCCATTTCGGATATAAAATTTTCAAGTGATGGGCGGTTTATCATTAGTCGGGATTACTTGAATTTAAAGCTTTGGGATATCCACAAGTGTTCTTCTCCGGTTGCACTATTCAAGGTTCATGAGCACCTTAGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTCAGTGCATATGGGCTTCACTTTGCAACTGGATCTTACAGCAACCAATTACGGATGTTCTCTTATGGCTCGGGAAGTGCGGAAGGGATCACTACTGAAGCAGGAAAAGTTCCTGACAGGTAA 1320 40.15 MTVSNGSFSAPLEWKFSQVFGERVAGEDIQDVDTISAIGFDKTGDNLAIGDRGGRVIIFERNDGKDTLKNLHTRNKLEQLNLTPVCHPEYQYKTEFQSHDPEFDYLKSLEIPEKINKLKWCVSPNGSRFILSTNDKTIKLWKVKEQKVKNIKEMNPNQFVSSENALLAENSFTSEQDKLSLTNGCHLDWSENMAMNKVASKDIHDMIADLDNTSRRRCQRVYGHAHDFNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGLIRLVDMRQSALCDHTAILLRAEELSRPKSFFTEIISSISDIKFSSDGRFIISRDYLNLKLWDIHKCSSPVALFKVHEHLRPRLCELYDNDSIFDRFECCLSAYGLHFATGSYSNQLRMFSYGSGSAEGITTEAGKVPDR 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 665718 672743 - Sed0001292.4 Sed08g0112 721888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0112 439 SMART WD40_4 102 142 IPR001680 GO:0005515(InterPro)
Sed08g0112 439 SMART WD40_4 25 60 IPR001680 GO:0005515(InterPro)
Sed08g0112 439 SMART WD40_4 258 305 IPR001680 GO:0005515(InterPro)
Sed08g0112 439 SMART WD40_4 215 254 IPR001680 GO:0005515(InterPro)
Sed08g0112 439 SMART WD40_4 324 362 IPR001680 GO:0005515(InterPro)
Sed08g0112 439 SMART WD40_4 389 420 IPR001680 GO:0005515(InterPro)
Sed08g0112 439 Pfam WD domain, G-beta repeat 120 141 IPR001680 GO:0005515(InterPro)
Sed08g0112 439 Pfam WD domain, G-beta repeat 218 254 IPR001680 GO:0005515(InterPro)
Sed08g0112 439 Gene3D - 67 312 IPR015943 GO:0005515(InterPro)
Sed08g0112 439 Gene3D - 313 434 IPR015943 GO:0005515(InterPro)
Sed08g0112 439 PIRSF PPA2_B55 4 439 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Sed08g0112 439 SUPERFAMILY WD40 repeat-like 33 425 IPR036322 GO:0005515(InterPro)
Sed08g0112 439 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 254 281 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Sed08g0112 439 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 118 146 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Sed08g0112 439 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 226 253 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Sed08g0112 439 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 282 310 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Sed08g0112 439 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Sed08g0112 439 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 311 338 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Sed08g0112 439 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 339 366 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Sed08g0112 439 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 367 392 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Sed08g0112 439 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 393 419 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Sed08g0112 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 151 IPR001680 GO:0005515(InterPro)
Sed08g0112 439 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 30 192 - -
Sed08g0112 439 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 12 437 IPR000009 GO:0000159(PANTHER)|GO:0000159(InterPro)|GO:0005829(PANTHER)|GO:0019888(InterPro)|GO:0019888(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0112 K04354 - - csv:101206601 776.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0110 Sed-Chr8:665718 Sed08g0112 Sed-Chr8:665718 2.00E-250 dispersed
Sed08g0112 Sed-Chr8:665718 Sed09g1698 Sed-Chr9:40263978 1.20E-145 dispersed
Sed08g0111 Sed-Chr8:665718 Sed08g0112 Sed-Chr8:665718 6.60E-258 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36