Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0113 ATGGCGGATCTTCACGGATTTCATCCCCTCGCCGGTTATTATTACCAGTCCTCCTCTCCGCCTCCGCCGCCGCCGCCGGACAGCCTCGTCCTTCCGGTTAACTATCAAACCTATTCTACTGCTAATTCCGCCGATTACTCTCACCGGCTTCCGCCGTTCGGATCGGAGCACATGCCGTCGGTTTCGTCCGTCGCCGCCGTGGATATTCAAACTGTTCGCGATTCCGAGGCGGAGGAGTCTGCCGGTGCGATTAGAGCCAAAATCGCTTCTCATCCTCTTTACCCTAAGCTCGTCGATGCCTTCGTCGACTGCCAAAAGGTCGGTGCACCGCCGGAGATCGCTAACATTTTAGGCAAAAGCAATGGTGGAAATCTGATCGGCGAAAGAATTTCCGGCGTTTCAACTTGCTTTGGTGCCGATCCCGAACTCGATGAGTTCATGGAAACATATTGCGAGTTATTGGCGAAGTACAAGGTGGATCTCTCACAGCCGTTTGTTGAAGCATCATCATTCCTCAAGAACATGGAAATGCAGTTAAATGGGCTATGCAATGCCGCCACCAGAGGCTACGTTTCCGGTGATGAAGCTGCTGCTGGTTCATCGGAAGAGGATCAAAGCGCGGGAGAAGTAGAATTACAGGGCTCTTTGCCGGCAAATGAAAACCGTGAACTGAAGGATCGACTCCTACGCAAGTACGGTGGTTATATTAGTGGCTTAAAGCAAGAATTCTCTAAAACTAAAAAGAAAATCAAACTGCCAAAAGAAGCCAGGCAGATCCTGCTTGACTGGTGGAACATCCATTGCAAATGGCCTTACCCCACTGAGACGGACAAAGTTGAATTGGCCGAGTCGACCGGACTAGACCAAAAACAGATAAACAACTGGTTCATAAATCAGAGGAAACGGCATTGGAAACCATCTGAAAATATTCAATTTGCTGTTATGCATGGTCTTTATGGACCCCCTTATATGATGGTTGAATGA 984 49.19 MADLHGFHPLAGYYYQSSSPPPPPPPDSLVLPVNYQTYSTANSADYSHRLPPFGSEHMPSVSSVAAVDIQTVRDSEAEESAGAIRAKIASHPLYPKLVDAFVDCQKVGAPPEIANILGKSNGGNLIGERISGVSTCFGADPELDEFMETYCELLAKYKVDLSQPFVEASSFLKNMEMQLNGLCNAATRGYVSGDEAAAGSSEEDQSAGEVELQGSLPANENRELKDRLLRKYGGYISGLKQEFSKTKKKIKLPKEARQILLDWWNIHCKWPYPTETDKVELAESTGLDQKQINNWFINQRKRHWKPSENIQFAVMHGLYGPPYMMVE 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 674054 682119 - Sed0018081.1 Sed08g0113 721889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0113 327 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed08g0113 327 SMART KNOX1_2 82 122 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed08g0113 327 ProSitePatterns 'Homeobox' domain signature. 281 304 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed08g0113 327 MobiDBLite consensus disorder prediction 194 216 - -
Sed08g0113 327 Pfam ELK domain 223 244 IPR005539 GO:0003677(InterPro)
Sed08g0113 327 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677(InterPro)
Sed08g0113 327 SUPERFAMILY Homeodomain-like 245 322 IPR009057 -
Sed08g0113 327 ProSiteProfiles ELK domain profile. 223 243 IPR005539 GO:0003677(InterPro)
Sed08g0113 327 SMART ELK_2 223 244 IPR005539 GO:0003677(InterPro)
Sed08g0113 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 136 313 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed08g0113 327 Pfam KNOX2 domain 137 183 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed08g0113 327 Pfam KNOX1 domain 83 117 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed08g0113 327 CDD homeodomain 255 307 IPR001356 GO:0003677(InterPro)
Sed08g0113 327 SMART HOX_1 245 310 IPR001356 GO:0003677(InterPro)
Sed08g0113 327 Gene3D - 248 309 - -
Sed08g0113 327 SMART KNOX2_2 133 184 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1657 Sed-Chr6:41329472 Sed08g0113 Sed-Chr8:674054 2.00E-86 dispersed
Sed08g0113 Sed-Chr8:674054 Sed13g1842 Sed-Chr13:23357092 1.30E-69 dispersed
Sed04g0619 Sed-Chr4:4788300 Sed08g0113 Sed-Chr8:674054 6.70E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39236 PF03791 KNOX2 1.40E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0113 - - - 0.0