Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0113 | ATGGCGGATCTTCACGGATTTCATCCCCTCGCCGGTTATTATTACCAGTCCTCCTCTCCGCCTCCGCCGCCGCCGCCGGACAGCCTCGTCCTTCCGGTTAACTATCAAACCTATTCTACTGCTAATTCCGCCGATTACTCTCACCGGCTTCCGCCGTTCGGATCGGAGCACATGCCGTCGGTTTCGTCCGTCGCCGCCGTGGATATTCAAACTGTTCGCGATTCCGAGGCGGAGGAGTCTGCCGGTGCGATTAGAGCCAAAATCGCTTCTCATCCTCTTTACCCTAAGCTCGTCGATGCCTTCGTCGACTGCCAAAAGGTCGGTGCACCGCCGGAGATCGCTAACATTTTAGGCAAAAGCAATGGTGGAAATCTGATCGGCGAAAGAATTTCCGGCGTTTCAACTTGCTTTGGTGCCGATCCCGAACTCGATGAGTTCATGGAAACATATTGCGAGTTATTGGCGAAGTACAAGGTGGATCTCTCACAGCCGTTTGTTGAAGCATCATCATTCCTCAAGAACATGGAAATGCAGTTAAATGGGCTATGCAATGCCGCCACCAGAGGCTACGTTTCCGGTGATGAAGCTGCTGCTGGTTCATCGGAAGAGGATCAAAGCGCGGGAGAAGTAGAATTACAGGGCTCTTTGCCGGCAAATGAAAACCGTGAACTGAAGGATCGACTCCTACGCAAGTACGGTGGTTATATTAGTGGCTTAAAGCAAGAATTCTCTAAAACTAAAAAGAAAATCAAACTGCCAAAAGAAGCCAGGCAGATCCTGCTTGACTGGTGGAACATCCATTGCAAATGGCCTTACCCCACTGAGACGGACAAAGTTGAATTGGCCGAGTCGACCGGACTAGACCAAAAACAGATAAACAACTGGTTCATAAATCAGAGGAAACGGCATTGGAAACCATCTGAAAATATTCAATTTGCTGTTATGCATGGTCTTTATGGACCCCCTTATATGATGGTTGAATGA | 984 | 49.19 | MADLHGFHPLAGYYYQSSSPPPPPPPDSLVLPVNYQTYSTANSADYSHRLPPFGSEHMPSVSSVAAVDIQTVRDSEAEESAGAIRAKIASHPLYPKLVDAFVDCQKVGAPPEIANILGKSNGGNLIGERISGVSTCFGADPELDEFMETYCELLAKYKVDLSQPFVEASSFLKNMEMQLNGLCNAATRGYVSGDEAAAGSSEEDQSAGEVELQGSLPANENRELKDRLLRKYGGYISGLKQEFSKTKKKIKLPKEARQILLDWWNIHCKWPYPTETDKVELAESTGLDQKQINNWFINQRKRHWKPSENIQFAVMHGLYGPPYMMVE | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 674054 | 682119 | - | Sed0018081.1 | Sed08g0113 | 721889 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0113 | 327 | Pfam | Homeobox KN domain | 263 | 302 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed08g0113 | 327 | SMART | KNOX1_2 | 82 | 122 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed08g0113 | 327 | ProSitePatterns | 'Homeobox' domain signature. | 281 | 304 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed08g0113 | 327 | MobiDBLite | consensus disorder prediction | 194 | 216 | - | - | |
Sed08g0113 | 327 | Pfam | ELK domain | 223 | 244 | IPR005539 | GO:0003677(InterPro) | |
Sed08g0113 | 327 | ProSiteProfiles | 'Homeobox' domain profile. | 243 | 306 | IPR001356 | GO:0003677(InterPro) | |
Sed08g0113 | 327 | SUPERFAMILY | Homeodomain-like | 245 | 322 | IPR009057 | - | |
Sed08g0113 | 327 | ProSiteProfiles | ELK domain profile. | 223 | 243 | IPR005539 | GO:0003677(InterPro) | |
Sed08g0113 | 327 | SMART | ELK_2 | 223 | 244 | IPR005539 | GO:0003677(InterPro) | |
Sed08g0113 | 327 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 136 | 313 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed08g0113 | 327 | Pfam | KNOX2 domain | 137 | 183 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed08g0113 | 327 | Pfam | KNOX1 domain | 83 | 117 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed08g0113 | 327 | CDD | homeodomain | 255 | 307 | IPR001356 | GO:0003677(InterPro) | |
Sed08g0113 | 327 | SMART | HOX_1 | 245 | 310 | IPR001356 | GO:0003677(InterPro) | |
Sed08g0113 | 327 | Gene3D | - | 248 | 309 | - | - | |
Sed08g0113 | 327 | SMART | KNOX2_2 | 133 | 184 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g1657 | Sed-Chr6:41329472 | Sed08g0113 | Sed-Chr8:674054 | 2.00E-86 | dispersed | |
Sed08g0113 | Sed-Chr8:674054 | Sed13g1842 | Sed-Chr13:23357092 | 1.30E-69 | dispersed | |
Sed04g0619 | Sed-Chr4:4788300 | Sed08g0113 | Sed-Chr8:674054 | 6.70E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39236 | PF03791 | KNOX2 | 1.40E-21 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0113 | - | - | - | 0.0 |