Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0132 ATGGCTGCTCGAGGCGTTGATTTCAAGTGGTATGACGGATTTTTCTTGTCGATGCTCGCGACTAGTGTAGTGATTTTTTCGTTCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATTGTGGTTGATTACACTACCGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCGGTCCTTGCGCTTCTGCTATATCCATTTCTTTGGGTTTGGACTGCCATTGGTACTTTATGGTTTAGAGAGGCCCATAAATGTCTTCCTGAGCCAGGTCAGAAATGGGGATTTCTAATTTGGTTGCTTTTTAGCTATTGTGCTCTCCTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAGCTCGTAGACAAGCACTCTTGATTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGAATAGAAACAAGGGCAATGGGCCAAGATGCTGCTACATATCATCACCATCCCGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAGGCACTTATTGAGGACCTTCCCAAATTCATGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGCCCTATCTGCTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTTCCTTGTGCTCATAATTTCCACGTCGGATGTATCGACGTGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGTTGCTCGGTTTTCCCAAACCTCGACCTCAGTGCTCTGTCCAATCTCCGTTCTGATACTGATAGGCCTTCTGCGAGCGTTGTTACAGCCAATCCTTATATGAGATCTGATCCTTTGAGCCAAAGTTATCTGGTGAGATTGCAGGGTCTGCTTCGACCTGTTCGCACTGAAATCCGTGGCACACACGGTGATTTAGAGTCCGCTCGTGCTTCGGAAGCTGCTGGGAATGCTGAAAATGTGCCTGCCGGTGACCAAACTATACCAGAACGGTCTCCCGGGCCGTAA 1116 47.13 MAARGVDFKWYDGFFLSMLATSVVIFSFNWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWVWTAIGTLWFREAHKCLPEPGQKWGFLIWLLFSYCALLCIACMSLGKWLARRQALLIRAQQGIPVSEYGVLVDMIRVPDWAFEAAGIETRAMGQDAATYHHHPGLYLTPAQREAVEALIEDLPKFMLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDVWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVTANPYMRSDPLSQSYLVRLQGLLRPVRTEIRGTHGDLESARASEAAGNAENVPAGDQTIPERSPGP 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 743362 750340 - Sed0006960.1 Sed08g0132 721908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0132 371 MobiDBLite consensus disorder prediction 338 371 - -
Sed08g0132 371 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Sed08g0132 371 FunFam E3 ubiquitin-protein ligase SIS3 205 283 - -
Sed08g0132 371 Pfam Ring finger domain 236 278 IPR001841 -
Sed08g0132 371 SMART ring_2 237 277 IPR001841 -
Sed08g0132 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 283 IPR013083 -
Sed08g0132 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 354 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Sed08g0132 371 SUPERFAMILY RING/U-box 218 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0132 Sed-Chr8:743362 Sed12g1878 Sed-Chr12:29989243 1.00E-195 dispersed
Sed01g1661 Sed-Chr1:12077670 Sed08g0132 Sed-Chr8:743362 9.20E-154 wgd
Sed12g1877 Sed-Chr12:29989243 Sed08g0132 Sed-Chr8:743362 9.50E-197 wgd
Sed08g0132 Sed-Chr8:743362 Sed08g2501 Sed-Chr8:37819993 5.40E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0132 K16284 - csv:101208939 679.863