Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0135 ATGAAGGAGAACAATGATGGATTCGTGCGGGCGGATCAGATTGATCTGAAGAGCTTGGATGAACAGCTCGAGAGGCATCTCAACAGAGCCTTGACGATGGAGAAGAACAAGAAGAAGGATGAAGATGGCGGCCATAGCTTTCTTGCTTCAGCAGCTATCGCTCGGAGTAGGTCTACTAAAGTTGCTGCTAAGGAGCGGCTGGATTGGGAGATCGATCCGTCGAAACTGATTATCAAGAGCGTCATTGCTCGTGGTACTTTCGGCACCGTTCACCGCGGCGTTTACGACGGACTAGATGTCGCCGTCAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGGACAGAAGCTGAAATTTCTTTTCTAAGAACATCTTTTACACAAGAAGTTGCTGTTTGGCATAAACTAGAGCATCCCAATGTTACTAAGTTTATAGGAGCAACAATGGGCTCAGCAGAGTTACAGATTCAAACCGAAAATGGTCTAATAGGCATGCCAAGTAACATATGTTGTGTCGTGGTGGAGTATCTCGCCGGAGGTGCCCTCAAATCTTATCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGTTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTCCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGCTTTTGGACAAAACACGAACGGTCAAAATTGCTGATTTTGGTGTTGCTAGAGTTGAGGCCTCGAATCCCAATGACATGACCGGGGAGACCGGGACACTCGGTTACATGGCTCCTGAGGTTCTCAATGGCAACCCGTATAACAGGAAGTGTGATGTGTACAGCTTTGGTATCTGCCTGTGGGAAATTTATTGCTGTGACATGCCTTATCCTGACCTTAGTTTCTCCGAAGTGACTTCCGCTGTGGTTCGTCAGAATCTGAGGCCAGAGATGCCAAGATGTTGTCCGAGCTCTCTTGCAAACGTGATGAAGCGTTGCTGGGATGCGACCCCGGACAAGCGGCCAGAGATGGATGAAGTAGTTTCCTTGTTGGAGGCCATTGACACATCAAAGGGTGGAGGTATGATCCCTGTTGATCAAGCTCAGGGTTGTCTGTGCTTTCGAAAATATAGAGGACCCTGA 1140 47.54 MKENNDGFVRADQIDLKSLDEQLERHLNRALTMEKNKKKDEDGGHSFLASAAIARSRSTKVAAKERLDWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEISFLRTSFTQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEMPRCCPSSLANVMKRCWDATPDKRPEMDEVVSLLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 772472 776479 + Sed0026295.1 Sed08g0135 721911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0135 379 Gene3D Phosphorylase Kinase; domain 1 65 159 - -
Sed08g0135 379 CDD STKc_MAP3K-like 82 350 - -
Sed08g0135 379 SUPERFAMILY Protein kinase-like (PK-like) 63 350 IPR011009 -
Sed08g0135 379 Coils Coil 16 36 - -
Sed08g0135 379 Gene3D Transferase(Phosphotransferase) domain 1 177 366 - -
Sed08g0135 379 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0135 379 Pfam Protein tyrosine and serine/threonine kinase 78 349 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0135 379 FunFam Kinase suppressor of Ras 1 65 160 - -
Sed08g0135 379 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 55 351 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Sed08g0135 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0135 379 SMART serkin_6 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0135 379 FunFam Serine/threonine-protein kinase HT1 176 361 - -
Sed08g0135 379 PRINTS Tyrosine kinase catalytic domain signature 277 299 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0135 379 PRINTS Tyrosine kinase catalytic domain signature 321 343 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0135 379 PRINTS Tyrosine kinase catalytic domain signature 211 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0135 379 PRINTS Tyrosine kinase catalytic domain signature 173 186 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0557 Sed-Chr6:4870613 Sed08g0135 Sed-Chr8:772472 1.10E-184 dispersed
Sed08g0135 Sed-Chr8:772472 Sed09g1106 Sed-Chr9:35055861 1.10E-144 dispersed
Sed12g1881 Sed-Chr12:30004010 Sed08g0135 Sed-Chr8:772472 1.80E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79579 PF07714 PK_Tyr_Ser-Thr 2.40E-63 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0135 - - - 0.0