Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0136 ATGCAGGGCGTTGCTTATTCTCGATTGGGCGGCCTTCACAAATCCTTTTCGCTCTACCGCAACGTTCCATGGTGGGATCACATTCTCGAGCCAGATTCCGATCTCGTGATCCGATGGAACCGCATCTTCCTCGTCACCTGCTTGATCGCTCTCTTCATCGATCCGCTCTACTTCTACCTCCCTGTGATCGGCGGCCCTGCCTGTATGCGCTTCAACCTCCGCCTCGGCATCGTCGTCACCGTCTTCCGCTCCATCGTCGATCTGTTCTCCCTCTTTCACATGCTCATGAAGTTCCGTACTGCCTTTGTTGCGCCGAATTCTAGGGTTTTTGGCCGCGGAGAGCTTGTTAAGGAACCTAGGGCCATTGCGATCCGCTATCTCAAGAAGGACTTTGTTGTCGATCTTGCCGCTACTCTTCCCCTGCCTCAGATTGTGATTTGGCTTGTGATTCCAGCGTTACATGTTCCTACAGCGTCTCATGCCAACCACACTCTTGCTTTGATTGTGCTCATTCAATATGCTCCTCGACTGTTTGTTATATTTCCTCTGAATCGAAGGATCAACAAGACCACTGGAGCGATAGCCAAAACTGCGTGGGCCGGTGCAGCGTATAATCTGCTTCTCTATTTGCTTGCTAGCCATGTTATAGGAGCTGCATGGTATGTGGCATCCATTCAGCGGCAGGATGAGTGTTGGATGTTAGAATGTAGAAAGGAGATGAATACTACACATTCTCCTTCTTGCAATCCCGTTTTTCTGGATTGTGATAGTTTGAATCGGTCGGATCGAAAGGCTTGGCTTAGAGTTACTCGTGTTCTTACCAGTTGTGATGCGCTAAATGATGACAAGAATTTTGAGTTTGGGATGTTTGCTGATGCGTTTACTGATGAAGTTGCTTCATCCAACTTTTTCGAGAAGTACTTTTACTGCCTTTGGTGGGGTTTGAAGAGTCTGAGTGCATATGGACAAAATTTAACAACAAGCACTTATGTGGGTGAAATTCTATTTAGCATTATGATTTGCTCATTGGGGTTGGTTCTTTTCTCACACCTCATAGGTCAAGTGCAGAGCTATCTGCAATCCACAACTGCTAGACTTGAACAATGGAGAGTAAAACGAAGAGATACAGAGGAATGGATGAGGCATCGACAATTACCCGTTCATTTGCAAGACCGTGTTCGTCGATTTGTTCAATATAAATGGATTGCGACTCGAGGTGTAGATGAAGAGTCGCTCTTGCGCTCTTTACCTTTAGATCTTCGACGTCAAATTCAGAGACATCTTTCTCTTGCACTCGTTCGCCGTGTTCCCTTTTTCGCACAAATGGACGCTCAGCTACTCGACGCCATATGCGAGCGTCTCGTCTCATCCTTGAATACTAAAGACACATTCTTAACCAGGGAGGGAGATCCAGTAAACGAGATGCTGTTCATCATCAGAGGCCAACTAGAGAGCTCCACCACGAATGGAGGCAGATCAGGATTCTTCAACTCCATAACCCTCCGACCCGGAGACTTCTGCGGCGAAGAGCTACTAACATGGGCATTAGTCCCATCACCCAGCCTCAGCTTCCCCTCCTCGACTCGAACCGTGAAGTCCCTAACCGAAGTCGAGGCATTCGCTCTCCGAGCTGAGGATCTGAAGTTCGTAGCCAGCCAGTTCAAGAGGCTCCACAGCAAGAAACTGCAGCATGCTTTCAGATACTATTCCCACCAATGGAGGACATGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGATATGTGAAGAGAAAACTAGCCATGGAGTTGGCAAGACAAGAAGAGCTTTATTACACAACCATAATGGACCAAGAGTCCAGCCATGGCAGTGAAATGGAAGAAATTGGTGAAACCAGTGGTGGGTTCAAAAAGGAGAGTGGAAAAAAACCAAAAGGGCTTGGAATAACAATGTTGGCTTCAAAATTTGCAGCAAATACAAGAAGAGGGGTTAACCAGAAATTTTCTGCACTTGTTGATTCTGACTCCACCAGCTTGAAAATGCCCAAGCTGTTCAAGCCTGATGAACCAGATTTCTCTGCTTTCCAAGATGGGAGTTGA 2079 47.09 MQGVAYSRLGGLHKSFSLYRNVPWWDHILEPDSDLVIRWNRIFLVTCLIALFIDPLYFYLPVIGGPACMRFNLRLGIVVTVFRSIVDLFSLFHMLMKFRTAFVAPNSRVFGRGELVKEPRAIAIRYLKKDFVVDLAATLPLPQIVIWLVIPALHVPTASHANHTLALIVLIQYAPRLFVIFPLNRRINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQDECWMLECRKEMNTTHSPSCNPVFLDCDSLNRSDRKAWLRVTRVLTSCDALNDDKNFEFGMFADAFTDEVASSNFFEKYFYCLWWGLKSLSAYGQNLTTSTYVGEILFSIMICSLGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMRHRQLPVHLQDRVRRFVQYKWIATRGVDEESLLRSLPLDLRRQIQRHLSLALVRRVPFFAQMDAQLLDAICERLVSSLNTKDTFLTREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSLSFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYTTIMDQESSHGSEMEEIGETSGGFKKESGKKPKGLGITMLASKFAANTRRGVNQKFSALVDSDSTSLKMPKLFKPDEPDFSAFQDGS 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 777936 781802 - Sed0011197.1 Sed08g0136 721912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0136 692 SUPERFAMILY cAMP-binding domain-like 367 563 IPR018490 -
Sed08g0136 692 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
Sed08g0136 692 Pfam Cyclic nucleotide-binding domain 461 550 IPR000595 -
Sed08g0136 692 Gene3D - 42 362 - -
Sed08g0136 692 FunFam Cyclic nucleotide-gated ion channel 1 436 554 - -
Sed08g0136 692 Pfam Ion transport protein 39 365 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g0136 692 Gene3D Jelly Rolls 436 556 IPR014710 -
Sed08g0136 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 661 - -
Sed08g0136 692 MobiDBLite consensus disorder prediction 673 692 - -
Sed08g0136 692 CDD CAP_ED 438 569 IPR000595 -
Sed08g0136 692 Gene3D Helix hairpin bin 364 428 - -
Sed08g0136 692 ProSiteProfiles cAMP/cGMP binding motif profile. 438 568 IPR000595 -
Sed08g0136 692 SMART cnmp_10 438 569 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0570 Sed-Chr6:4984924 Sed08g0136 Sed-Chr8:777936 2.10E-262 dispersed
Sed08g0136 Sed-Chr8:777936 Sed13g2104 Sed-Chr13:25724430 6.30E-231 dispersed
Sed08g0136 Sed-Chr8:777936 Sed08g0137 Sed-Chr8:777936 1.10E-264 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0136 K05391 - csv:101209760 1175.23