Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0137 ATGTTAGAATGTAGAAAGGAGATGAATACTACACATTCTCCTTCTTGCAATCCCGTTTTTCTGGATTGTGATAGTTTGAATCGGTCGGATCGAAAGGCTTGGCTTAGAGTTACTCGTGTTCTTACCAGTTGTGATGCGCTAAATGATGACAAGAATTTTGAGTTTGGGATGTTTGCTGATGCGTTTACTGATGAAGTTGCTTCATCCAACTTTTTCGAGAAGTACTTTTACTGCCTTTGGTGGGGTTTGAAGAGTCTGAGTGCATATGGACAAAATTTAACAACAAGCACTTATGTGGGTGAAATTCTATTTAGCATTATGATTTGCTCATTGGGGTTGGTTCTTTTCTCACACCTCATAGGTCAAGTGCAGAGCTATCTGCAATCCACAACTGCTAGACTTGAACAATGGAGAGTAAAACGAAGAGATACAGAGGAATGGATGAGGCATCGACAATTACCCGTTCATTTGCAAGACCGTGTTCGTCGATTTGTTCAATATAAATGGATTGCGACTCGAGGTGTAGATGAAGAGTCGCTCTTGCGCTCTTTACCTTTAGATCTTCGACGTCAAATTCAGAGACATCTTTCTCTTGCACTCGTTCGCCGTGTTCCCTTTTTCGCACAAATGGACGCTCAGCTACTCGACGCCATATGCGAGCGTCTCGTCTCATCCTTGAATACTAAAGACACATTCTTAACCAGGGAGGGAGATCCAGTAAACGAGATGCTGTTCATCATCAGAGGCCAACTAGAGAGCTCCACCACGAATGGAGGCAGATCAGGATTCTTCAACTCCATAACCCTCCGACCCGGAGACTTCTGCGGCGAAGAGCTACTAACATGGGCATTAGTCCCATCACCCAGCCTCAGCTTCCCCTCCTCGACTCGAACCGTGAAGTCCCTAACCGAAGTCGAGGCATTCGCTCTCCGAGCTGAGGATCTGAAGTTCGTAGCCAGCCAGTTCAAGAGGCTCCACAGCAAGAAACTGCAGCATGCTTTCAGATACTATTCCCACCAATGGAGGACATGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGATATGTGAAGAGAAAACTAGCCATGGAGTTGGCAAGACAAGAAGAGCTTTATTACACAACCATAATGGACCAAGAGTCCAGCCATGGCAGTGAAATGGAAGAAATTGGTGAAACCAGTGGTGGGTTCAAAAAGGAGAGTGGAAAAAAACCAAAAGGGCTTGGAATAACAATGTTGGCTTCAAAATTTGCAGCAAATACAAGAAGAGGGGTTAACCAGAAATTTTCTGCACTTGTTGATTCTGACTCCACCAGCTTGAAAATGCCCAAGCTGTTCAAGCCTGATGAACCAGATTTCTCTGCTTTCCAAGATGGGAGTTGA 1383 44.83 MLECRKEMNTTHSPSCNPVFLDCDSLNRSDRKAWLRVTRVLTSCDALNDDKNFEFGMFADAFTDEVASSNFFEKYFYCLWWGLKSLSAYGQNLTTSTYVGEILFSIMICSLGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMRHRQLPVHLQDRVRRFVQYKWIATRGVDEESLLRSLPLDLRRQIQRHLSLALVRRVPFFAQMDAQLLDAICERLVSSLNTKDTFLTREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSLSFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYTTIMDQESSHGSEMEEIGETSGGFKKESGKKPKGLGITMLASKFAANTRRGVNQKFSALVDSDSTSLKMPKLFKPDEPDFSAFQDGS 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 777936 781802 - Sed0011197.2 Sed08g0137 721913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0137 460 Gene3D Jelly Rolls 204 324 IPR014710 -
Sed08g0137 460 SUPERFAMILY cAMP-binding domain-like 135 331 IPR018490 -
Sed08g0137 460 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 429 - -
Sed08g0137 460 MobiDBLite consensus disorder prediction 441 460 - -
Sed08g0137 460 ProSiteProfiles cAMP/cGMP binding motif profile. 206 336 IPR000595 -
Sed08g0137 460 SMART cnmp_10 206 337 IPR000595 -
Sed08g0137 460 Gene3D Helix hairpin bin 132 196 - -
Sed08g0137 460 CDD CAP_ED 206 337 IPR000595 -
Sed08g0137 460 FunFam Cyclic nucleotide-gated ion channel 1 204 322 - -
Sed08g0137 460 SUPERFAMILY Voltage-gated potassium channels 68 168 - -
Sed08g0137 460 Pfam Cyclic nucleotide-binding domain 229 318 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0137 Sed-Chr8:777936 Sed13g2104 Sed-Chr13:25724430 3.20E-154 dispersed
Sed08g0136 Sed-Chr8:777936 Sed08g0137 Sed-Chr8:777936 1.10E-264 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0137 K05391 - csv:101209760 792.727