Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0139 ATGTTGTCGAGTTCTTGTTTGAGTTTGTTAGAGTTATCATCAGCGGATATGATGGATTTTCCTCCTACACCAAAAGCCGTTCCGCGGGTTATGACTGCTTCAGGTATATTTTCGGATAAGGACAGAGATTCGGAAGTTACCTCGTCGACATGTCGAGGGAGGAAGATAATAGTGGCAAATTTTCTTCCTATTCATGCTAAAAAGGATCCAGATTCTGGAAGATGGAACTTTAGTTTGGATGAGGACTCGCTTCTGCTTCAGTTGAAGGATGGCTTACCATCTGATGTAGATGTTATATATGTTGGATCGTTAAAGGTCGATGTCGATGTCCGAGAGCAAGAAGAGATTTCGCTGAAACTATTGGACGAATTTAACTGTGCACCGACTTTCATCCCTCCGTCCCTTCAGAAACAATTCTATCATGGTTTCTGTAAACAACACTTGTGGCCACTTTTTCATTACATGTTGCCAATTTCCCCTTATCATGGATCTCGGTTTGATCGACGTCTTTGGCAGGCGTATCTTTCCGCCAACAAAAGGTTTGCAGATAAAGTTATGGAGGTTATCAATTTGGAAGAAGATTATGTTTGGATTCATGACTACCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGTTACAACCGGATTAAGCTTGGATTTTCCCTTCATAGTCTGTTTCCATCATCAGAAATCTATCGAACTCTGCCTGTCAGAGATGAAATTTTAAGAGCATTGCTAAACGCAGACCAAATCAGTTTCCACACATTCGATTACGCTCGCCACTTCCTATCTTGTTGTAGTAGACTGCTTGGTCTGGAGTATGAATCTAAACGGGGCTATCTCACGCTCGAGTATTTTGGCCGTGCGATATACATCAAGATTTTGCCTGTTGGAATTCATGTTGGTCGAATTGAATTTGCATTAAATCAGTCTCAAACTGCCATCAAAGTGAGGGAAATCCAAGAAAACCTCAAAGGAAAGAAGCTTATTCTTGGTGTTGATGATATGGACATATTTAAAGGCATTGGTTTAAAGTTATTAGCTATGGAACAGCTCTTGAATCAGCATCCAGAGTTGCGGGGCAATGTCGTTCTGGTGCAAATTTTAAATCCAGCACGGAGCAACGGAAATGACGTTCTGGAAGCAAAAAGGGAAACTTATGAGATAACCGAGAGGATTAACAATGTTTTTGGTGTTCCAGGATACAAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCATGAGAAGATTGCATATTATGTATTAGCAGATTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATATGAGTACATTGTTTGTCGACAGGGAACTTCGCACATGGATGAAGTCTTGGAAATTGCTCCAGATTCACCTCGTACCAGCACGATTGTTGTGTCCGAATTCATAGGTTGTTCACCATCTCTAAGTGGTGCAGTCAGGGTAAACCCTTGGGATTTTGATGCTGTAGCAGATGCACTGTATGTGGCTGTCACAATGCCTGCTTTAGAGAAGCAACTGAGACACGAAAAGCATTACCGTTACATTAGCTCTCATGATGTTGCTTACTGGGCTCGCAGTTTCTTGCAAGATTTGGAACGAGCATGCCGAGAACACTATAGTAAACGTTGTTGGGGTATTGGACTTGGTTTAGGTTTTAGAATTTTGTCACTATCACCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATATAGGAGTGCTTCTAGGAGGGCGATATTTTTGGATTACGACGGGACTGTTGTTTCCCAAGCTTCGTTGGTCAAATCCCCGACACCTGAAGTCCTTTCTATCCTCAACAACCTTTGCACGGATTCAAAGAACACTGTGTTCGTAGTTAGTGGCAGGGGGAAAGATTCTCTCGGTTCATGGTTCGATTCGTGTAAGAATCTTGGTATTGCTGCTGAACATGGATACTACTTGAGGTGGGATAGGGACTCCGAATGGGAAGTTAGTACATTAGCTGAAAACTTCGATTGGAAAAGGATGGTGGAACCTGTGATGAAACAATATACCGAGGCAACCGATGGCTCATCCATCGAACCCAAGGATAGTGCCTTGGTATGGCACCATCAAGACGCCGACTCTTATTTTGGTTCATGCCAGGCCATGGAGCTCTTAGATCACCTTGAGAATGTCCTCGCTAACGAACCGGTAGTCGTCAAAAGAGGCCAGCAGATCGTCGAGGTGAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGATCAGCTCTGATAAAGCACCAGACTTTGTGTTGTGCATTGGAGATGATCGATCCGACGAAGACATGTTTGAGAGCATATCGAGTAGAATCTATAGCTCATCCCTTGCTTCCCCCCCAAAGATATTTGCATGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTACTTAGACGACACCGCCGACGTTTTGACCTTACTTCAATGCCTGGCAACTTCTACTAGCCGTAAATCAAGGTCAAGTTTTGAGTCTCGTGTTTTGTTCGAGGATGATGTTTGA 2568 42.91 MLSSSCLSLLELSSADMMDFPPTPKAVPRVMTASGIFSDKDRDSEVTSSTCRGRKIIVANFLPIHAKKDPDSGRWNFSLDEDSLLLQLKDGLPSDVDVIYVGSLKVDVDVREQEEISLKLLDEFNCAPTFIPPSLQKQFYHGFCKQHLWPLFHYMLPISPYHGSRFDRRLWQAYLSANKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYNRIKLGFSLHSLFPSSEIYRTLPVRDEILRALLNADQISFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRAIYIKILPVGIHVGRIEFALNQSQTAIKVREIQENLKGKKLILGVDDMDIFKGIGLKLLAMEQLLNQHPELRGNVVLVQILNPARSNGNDVLEAKRETYEITERINNVFGVPGYKPVILIDHPIPPHEKIAYYVLADCCIVNALRDGMNLVPYEYIVCRQGTSHMDEVLEIAPDSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYVAVTMPALEKQLRHEKHYRYISSHDVAYWARSFLQDLERACREHYSKRCWGIGLGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSQASLVKSPTPEVLSILNNLCTDSKNTVFVVSGRGKDSLGSWFDSCKNLGIAAEHGYYLRWDRDSEWEVSTLAENFDWKRMVEPVMKQYTEATDGSSIEPKDSALVWHHQDADSYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMISSDKAPDFVLCIGDDRSDEDMFESISSRIYSSSLASPPKIFACTVGQKPSKAKYYLDDTADVLTLLQCLATSTSRKSRSSFESRVLFEDDV 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 799337 802106 + Sed0025031.1 Sed08g0139 721915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0139 855 NCBIfam HAD-IIB family hydrolase 587 789 IPR006379 -
Sed08g0139 855 FunFam Alpha,alpha-trehalose-phosphate synthase 308 523 - -
Sed08g0139 855 CDD HAD_TPP 587 826 - -
Sed08g0139 855 Pfam Trehalose-phosphatase 589 823 IPR003337 GO:0005992(InterPro)
Sed08g0139 855 CDD GT20_TPS 54 539 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed08g0139 855 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 543 - -
Sed08g0139 855 Pfam Glycosyltransferase family 20 54 539 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed08g0139 855 Gene3D Glycogen Phosphorylase B; 47 307 - -
Sed08g0139 855 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 715 846 - -
Sed08g0139 855 SUPERFAMILY HAD-like 586 834 IPR036412 -
Sed08g0139 855 Gene3D - 585 709 IPR023214 -
Sed08g0139 855 Gene3D - 714 848 IPR023214 -
Sed08g0139 855 NCBIfam trehalose-phosphatase 583 834 IPR003337 GO:0005992(InterPro)
Sed08g0139 855 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 585 702 - -
Sed08g0139 855 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 835 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed08g0139 855 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 47 306 - -
Sed08g0139 855 Gene3D Glycogen Phosphorylase B; 308 523 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1624 Sed-Chr6:41020601 Sed08g0139 Sed-Chr8:799337 0.00E+00 dispersed
Sed08g0139 Sed-Chr8:799337 Sed14g1527 Sed-Chr14:23539662 0.00E+00 dispersed
Sed12g1884 Sed-Chr12:30061443 Sed08g0139 Sed-Chr8:799337 0.00E+00 wgd
Sed04g0641 Sed-Chr4:4978685 Sed08g0139 Sed-Chr8:799337 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0139 K16055 - csv:101209676 1563.13