Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0160 ATGAACAATGCAGGCTTGAAATTTCAAATTCGGGCTGTGAGTGAAGCTGCTGTAGATCCAGTTTCGTCGAATAAAGAGAATGGAGAACGATCGCCTCAAAGTTGGAAGATCAAAATGCTCTATGATGGAGATTGCCCACTTTGTATGCGTGAGGTTAATATGCTAAGAGAGAGGAATGGGAAATATGGCACAATCAAGTTTGTTGACATAAGTTCAGATGATTATACTCCAGAAGAAAACCAGGGCCTTGAGTACAAAACTGTTATGGGAAGAATCCATGCAATCCTTGCAGATGGTACCGTGGTCAGAGATGTTGAAGCCTTTAGAAGACTTTATGAACAAGTTGGTCTTGGATGGGTATATGCTGTTACAAAATATGAACCAGTTGGAGCATTAGCCGATGCTGTATATAGTCTCTGGGCAAAGTATCGTCTTCAATTAACAGGCCGGCCACCTCTAGAAGATATTCTGCTTGCACGGAAGAAAAACAAGGATGAAGTATGTAATGATAGCAAGGCTTGCAAAATGTAG 531 41.24 MNNAGLKFQIRAVSEAAVDPVSSNKENGERSPQSWKIKMLYDGDCPLCMREVNMLRERNGKYGTIKFVDISSDDYTPEENQGLEYKTVMGRIHAILADGTVVRDVEAFRRLYEQVGLGWVYAVTKYEPVGALADAVYSLWAKYRLQLTGRPPLEDILLARKKNKDEVCNDSKACKM 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 884551 888576 + Sed0009129.4 Sed08g0160 721936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0160 176 PANTHER SI:CH73-390P7.2 5 176 IPR044691 GO:0015035(InterPro)
Sed08g0160 176 CDD TRX_superfamily 37 85 - -
Sed08g0160 176 Pfam DCC1-like thiol-disulfide oxidoreductase 40 150 IPR007263 GO:0015035(InterPro)
Sed08g0160 176 SUPERFAMILY Thioredoxin-like 32 113 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0160 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0160 Sed-Chr8:884551 Sed12g1898 Sed-Chr12:30161118 2.70E-69 dispersed
Sed08g0159 Sed-Chr8:884551 Sed08g0160 Sed-Chr8:884551 1.60E-90 tandem
Sed08g0160 Sed-Chr8:884551 Sed08g0161 Sed-Chr8:884551 1.40E-81 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g696 . . Bda06g00579 . . . . Bma12g01025 . . . Cma11g00113 . Car11g00112 Sed08g0160 . Cpe04g01538 Bhi02g00401 Tan09g2207 Cmetu02g1858 . . . . Cla06g01641 Cam06g1824 Cec06g1873 Cco06g1879 Clacu06g1783 Cmu06g1724 Cre06g2543 . . Cone13ag0123 . . . . . . . . . Bpe07g00820 . . . . . Cmo11g00116 . . . . . . . . . . . . . . . . . . . . Lsi06g01526 Csa01g00176 Chy02g02556 Cme02g01943
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005977 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 7 2 1 38