Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0163 ATGTCGTCGCACAAAAGAAACCCTGATGATGGAGATGCTCCCGATGATAAGCGTAGGAAGTTTAGTTTTTGGAGTGTGGTTCGTGATGCACATTCATTGCAATTAATGCAACAATTATTGGAGCCGCTCATTCGTAAAGTGGTAAGGGAGGAGGTTGAATTGGCACTAAGAAAGCACATTACGATTACCAATGTGCAAAGGAATGATGGGAAAGGAATCTATTCTGCTGGGCCCAGGTGCTTTCAATTGAAGTTCATCACTGATGTGTCTCTCCCAGTGTTTACGGGAGCTCGAATTGAAGGAAGAGATGGTTCCAACTTTACAGTGGCTTTGATTGACACCCTAAGTGGGAAGATTGTAGACACTGGACCTCAAGCCTCAGCCAAGGTGGAAATTGTAGTGCTGGAGGGTGATTGTGAGGGTGAAGGTGAAGGTGGTAATTACACTATAGAGGAGTTTAAGAATAACATTGTAAGAGAGAGGGAAGGAAAGAAACCACTTCTTACAGGAGATACATTTTTGGTTCTCAAAGATGGCATTGGTTTGGTAGGTGAAATTTTTTTCACTGATAATTCAAGCTGGACTAGAAGCCGTCGGTTTAGGCTGGGTGCAAGAATTGTAGATGAAATTGATGGAACGAGAGTAGTAGAAGCAAAGACTTCAGCATTTTTGGTCAGGGATCACCGTGGAGAATTGTACAAGAAGCACCACCCTCCATCACTGGAAGATGAACTATGGAGATTGCAGAAAATTAGCAAAGATGGAGCCTTTCATAAGCGCCTGAGCCAAGAAAAAATCGAGACAGTGCAAGATTTCCTAACTCTACACCACCTACAACCTTCAAGGCTTCGTAATGTTCTTGGCCCTGGTATGTCTACCAAAATGTGGGAAGCTACAATCGAGCATGCACAGACGTGCGTTCTCGATAAGAAGCTTTACGTGTACAAACCTCGTGATTTGGATCGAAAAAATGGAGTGGTTTTTAATGTTGTAGGACAAGTGATGGGGCTACATTCAGATTACCAGTATGTTCCCACGGATAAGCTATCCGAAACTGAAAAGGCTGATGCTCACAACTTGGTTATCTCTGCATTCGAACACTGGGAAGAAGTCGATTCTATCGACGATGAAACATCTCTTTTAGGTGGCCCTTCTCACCCAAGTTTCCTTTACACCCCAAGCTCACCCATGGAGGACCAGTCTTATGGTAGCATGTATTTGGCTTCTCCAAAATTTGGTGGCTTTGATTTTACTCCATCAAATCCATATGCTTCTGACATAATTTCATCAATGGGTTCTCTTGGGAATGCGAGTGGCGTGGACGATCATGCTTTGCAGGGTTTTGAATCTTTGGTTGTAAGATATGGTCACATTCCAAGTTCTCCAAATTTTGCTAGCTCTTCCCTGATCTCGGATTCCGAGCCACTAAACTCACCTTTCTGCAGTTTAGATCATCTGCAAGGTTTAGATTCTGATTTCCAATGTAGCTCGATCTTAGAATCATGA 1506 43.16 MSSHKRNPDDGDAPDDKRRKFSFWSVVRDAHSLQLMQQLLEPLIRKVVREEVELALRKHITITNVQRNDGKGIYSAGPRCFQLKFITDVSLPVFTGARIEGRDGSNFTVALIDTLSGKIVDTGPQASAKVEIVVLEGDCEGEGEGGNYTIEEFKNNIVREREGKKPLLTGDTFLVLKDGIGLVGEIFFTDNSSWTRSRRFRLGARIVDEIDGTRVVEAKTSAFLVRDHRGELYKKHHPPSLEDELWRLQKISKDGAFHKRLSQEKIETVQDFLTLHHLQPSRLRNVLGPGMSTKMWEATIEHAQTCVLDKKLYVYKPRDLDRKNGVVFNVVGQVMGLHSDYQYVPTDKLSETEKADAHNLVISAFEHWEEVDSIDDETSLLGGPSHPSFLYTPSSPMEDQSYGSMYLASPKFGGFDFTPSNPYASDIISSMGSLGNASGVDDHALQGFESLVVRYGHIPSSPNFASSSLISDSEPLNSPFCSLDHLQGLDSDFQCSSILES 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 889092 895941 - Sed0013604.2 Sed08g0163 721939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0163 501 Pfam Calmodulin binding protein-like N-terminal domain 81 228 IPR046831 -
Sed08g0163 501 PANTHER OS02G0177800 PROTEIN 16 407 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Sed08g0163 501 Pfam Calmodulin binding protein central domain 241 306 IPR046830 -
Sed08g0163 501 Pfam Calmodulin binding protein C-terminal domain 311 373 IPR046829 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0163 Sed-Chr8:889092 Sed12g1899 Sed-Chr12:30164682 3.00E-230 dispersed
Sed08g0162 Sed-Chr8:889092 Sed08g0163 Sed-Chr8:889092 1.30E-294 tandem
Sed08g0163 Sed-Chr8:889092 Sed08g0164 Sed-Chr8:889092 6.30E-273 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0163 - - - 0.0