Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0165 ATGGCCGCGTTTCTTTTTGTAGTTTTGCTATCTATTCCATTCTCAGTTGAATCCAAGCTTTCTCTCGATTATTACCAGAAGACTTGCCCTAATTTCGCGAAAATCGTTCAAGAAACCGTCGCTCGCAAACAAGCTACCAGTCCGATCACCGCCGCCGCAACTCTCCACCTCTTCTTCAACGATTGTTTGGTTGAAGGCTGCGATGGATCTGTCCTCATCGCATCCAATTCCTTCAACCACGCCGAGCGCGACGCCGAAATCAACCTCTCCCTCCCCGGAGACGCCTTCGACGTCGTCACTCGAACCAAAATCGTCCTCGAGCTCTCCTGCCCCGGGATCGTCTCTTGCTCCGACATATTAGCACAGTCGACTCGCGATCTCATCGCGATCGTAGGCGGACCGTCGTACAACGTCGAGTTAGGTCGAAAAGACAGCCTCACCTCGAAATCCTCATCCGTGGAAGGCAACATTCCAAAACCTAATCAAACAATCGACGAACTGATCGAGCTATACACAGCGAAAGGCTTCACGATTCAAGAAATGGTAGCGCTATTCGGCGGACGAACAATCGGATTCTCGAATTGCAAGGAGTTCAGCGAGCGGATCTTCAGCTTCAGCAAAGCAACGGCAACAGATCCAGAAATTCATCCGAAATTCGCAGAGGCGTTGAAGAAGACTTGCGCCGATTACCAGAAGAATCCGGGAATGTCGGCGTACAGCGACGCCGTGACGCCGGCGAAGTTCGACAACCAGTACTACCAGAATCTGCTGATCGGAATGGGACTATCGGCCTCCGATCACGGTCTGGCGAAGGATTCGAGGACGAAGAAATTCGTAGAAATGTTCGCCGGAAACCAGGCGCTGTTCTTCAAGGAATTTGCTAAAGCGATGGAGAAGATGAGCGTTCTTGAGGTGAAAACTGACGGGAAAGGAGAAGTGAGGAGAAAATGCGATGCGTTCAATTCGATCCATGTTTGA 978 50.82 MAAFLFVVLLSIPFSVESKLSLDYYQKTCPNFAKIVQETVARKQATSPITAAATLHLFFNDCLVEGCDGSVLIASNSFNHAERDAEINLSLPGDAFDVVTRTKIVLELSCPGIVSCSDILAQSTRDLIAIVGGPSYNVELGRKDSLTSKSSSVEGNIPKPNQTIDELIELYTAKGFTIQEMVALFGGRTIGFSNCKEFSERIFSFSKATATDPEIHPKFAEALKKTCADYQKNPGMSAYSDAVTPAKFDNQYYQNLLIGMGLSASDHGLAKDSRTKKFVEMFAGNQALFFKEFAKAMEKMSVLEVKTDGKGEVRRKCDAFNSIHV 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 898595 900300 + Sed0011202.1 Sed08g0165 721941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0165 325 SUPERFAMILY Heme-dependent peroxidases 20 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 CDD secretory_peroxidase 19 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed08g0165 325 FunFam Peroxidase 23 169 - -
Sed08g0165 325 Pfam Peroxidase 36 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Plant peroxidase signature 29 48 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Plant peroxidase signature 53 73 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 FunFam Peroxidase 158 300 - -
Sed08g0165 325 ProSiteProfiles Plant heme peroxidase family profile. 19 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PANTHER - 6 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 Gene3D Peroxidase, domain 2 158 300 - -
Sed08g0165 325 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Haem peroxidase superfamily signature 51 65 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed08g0165 325 Gene3D - 23 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0165 Sed-Chr8:898595 Sed08g1372 Sed-Chr8:28302487 5.20E-103 dispersed
Sed12g1902 Sed-Chr12:30187499 Sed08g0165 Sed-Chr8:898595 9.10E-80 wgd
Sed08g0165 Sed-Chr8:898595 Sed08g2534 Sed-Chr8:38049478 4.40E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0165 K00430 - csv:101213178 526.168