Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0166 ATGGCGTCCCCTTTTCCTGCAATTTTTCTCATCTTCGTCTCCGTTTTCGCCGCCGTCTCCGCCTATCGGTCCTCCACGATCGGCGTTGGATTCATTTCCCGGCTCCTTGAAATTCAGGATCGCGAGAGAGCTCCGGCGCCGGTCCAAGTTGCTGCGGCTCGTGGAGTTCTTCGTCGGCTTCTTCCGTTCCACCTCTCCAGCTTTGAATTTCGAATCGTCTCTAAGGATGAATGTGGTGGAGAATCTTGCTTTGTGATTAGGAATCATCGCGCGTTCAAGAGAGTGGGGGATCCTGAAATTATAATCGCTGGGGTCACTGGTGTGGAGATTTTAGCTGGCTTGCACTGGTATCTAAAGAACTGGTGCGGTGCACACATATCTTGGGATAAAACAGGTGGTTCACAACTATTTTCTGTACCTAAGTCAGGTTCACTACCTCGTATTCAAAGTGACGAAATTATTGTTCAGAGGCCTGTTCCATTGAACTATTATCAGAATGCAGTTACATCAAGCTACTCTTTTGCCTGGTGGGACTGGGAGAGATGGGAAAAGGAAATAGACTGGATGGCTCTTCAGGGTATCAATATGCCTCTAGCATTTACTGGGCAGGAGGCTATCTGGCGAAAAGTATTTCAGAAATTTAATATAAGCAACTCAGATTTGGACGATTTCTTTGGAGGTCCAGCATTTCTTGCATGGTCACGTATGGGGAATCTGCACAAATGGGGTGGGCCACTGCCGCAGAGTTGGTTCAATCAACAGCTTATTCTGCAGAAAAAAATTATTGGCAGAATGTTTGAGCTAGGAATGACTCCAGTTCTGCCAGCTTTTTCGGGTAACATTCCTGCTGCTTTCAAACAAATATATCCATCAGCAAAGATAACACGTTTAGGAAATTGGTTTTCTGTTCACAGTGACCCTAGATGGTGCTGCACTTACCTTCTTGATGCCATGGACCCTTTATTTGTCGAGATTGGTAGAGCATTTATTCAGCAACAACTGAAAGAATATGGAAGAACATCACACGTATACAACTGTGATACCTTTGATGAGAACACCCCACCTGTTGATGAGGTGGAATATATCTCTTCATTAGGTGCAGCTATTTTTGGAGGAATGGAGGCAGGAGATTCTAATGCTGTCTGGCTAATGCAGGGGTGGATGTTTTCATATGATCCATTTTGGAGACCTCAACAAATGAAGGCTCTTTTACATTCTGTGCCTCTGGGAAGGCTGGTAGTCCTTGATTTGTATGCTGAAGTGAAACCGATTTGGATATCTTCTGAGCAATTCTATGGCGTCCCTCACGTCTGGAAAGTCTATTTCTTTCTTTCGTGCATGCTACATAACTTTGCTGGAAATGTTGAAATGTATGGCGTTTTAGATTCAATTGCATCTGGACCAATTGAAGCTCGTAGTAGCCCATTCTCAACAATGGTCGGGGTAGGAATGTCCATGGAAGGAATTGAACAGAATCCTGTTGTCTATGATCTCATGTCCGAAATGGCTTTTCAACACAACAAAGTTGATGTCAAGAAATGGCTTTATCAATATTCAATAAGACGATATGGTCGTTTAGTCCCTTCAGTACAAGATGCCTGGGATGTATTATATCACACCATCTACAACTGCACTGATGGTGCCAATGACAAAAACAGGGACGTAATTGTGGCATTTCCCGATGTTCATCCATCGTCAATCTTGGTGTCACCCGAGGGGTCTGACCTATACGATAAGTTGGACTCGAGCGTAGATAGCCTTCGAGATGCCACGTTTGATCGACCTCATCTTTGGTATCCTACTTCTGAAGTAATTCGTGCATTAAAGCTTTTCATTGCCGGTAGTGATCAGCTTTCTGGGAGTAACACTTACAGGTACGACCTTGTGGACTTGACCAGGCAAGCTCTAGCCAAATACTCGAACGAACTGTTCTTTAGAATTGTCAAAGCATATCAGTTATATGATGCTCAAACAGTAGCCAGTTTAAGCCAGCAGTTCCTTGAACTTGTCAATGATATAGACACATTATTGGCTTGTCATGAAGGATTTCTTCTAGGACCTTGGCTACAAAGCGCCAAGCAACTTGCTCAAAATGAAGAGCAGGAAAAACAGTATGAGTGGAATGCAAGAACTCAAATAACCATGTGGTTTGACAACACAGAGGAAGATGCAAGTTTGCTTCGTGATTATGGAAACAAGTATTGGAATGGACTCTTGGGCGATTACTACGGTCCCCGAGCAGCAATATACTTCAAGTTCATGAAAGAAAGCTTAGAGAATGGCTATGGATTTAGATTGAGTGCATGGAGGAGAGAGTGGATAAAGCTTACAAATGATTGGCAAAGCAGCAGAAAGGTTTACCCTGTGGAGAGCAGTGGAGATGCTGTTGACAGATCTCGCTGGCTTTACTACAAATACTTGCAAATACTTGAAAGCTATGATCAATGA 2448 43.63 MASPFPAIFLIFVSVFAAVSAYRSSTIGVGFISRLLEIQDRERAPAPVQVAAARGVLRRLLPFHLSSFEFRIVSKDECGGESCFVIRNHRAFKRVGDPEIIIAGVTGVEILAGLHWYLKNWCGAHISWDKTGGSQLFSVPKSGSLPRIQSDEIIVQRPVPLNYYQNAVTSSYSFAWWDWERWEKEIDWMALQGINMPLAFTGQEAIWRKVFQKFNISNSDLDDFFGGPAFLAWSRMGNLHKWGGPLPQSWFNQQLILQKKIIGRMFELGMTPVLPAFSGNIPAAFKQIYPSAKITRLGNWFSVHSDPRWCCTYLLDAMDPLFVEIGRAFIQQQLKEYGRTSHVYNCDTFDENTPPVDEVEYISSLGAAIFGGMEAGDSNAVWLMQGWMFSYDPFWRPQQMKALLHSVPLGRLVVLDLYAEVKPIWISSEQFYGVPHVWKVYFFLSCMLHNFAGNVEMYGVLDSIASGPIEARSSPFSTMVGVGMSMEGIEQNPVVYDLMSEMAFQHNKVDVKKWLYQYSIRRYGRLVPSVQDAWDVLYHTIYNCTDGANDKNRDVIVAFPDVHPSSILVSPEGSDLYDKLDSSVDSLRDATFDRPHLWYPTSEVIRALKLFIAGSDQLSGSNTYRYDLVDLTRQALAKYSNELFFRIVKAYQLYDAQTVASLSQQFLELVNDIDTLLACHEGFLLGPWLQSAKQLAQNEEQEKQYEWNARTQITMWFDNTEEDASLLRDYGNKYWNGLLGDYYGPRAAIYFKFMKESLENGYGFRLSAWRREWIKLTNDWQSSRKVYPVESSGDAVDRSRWLYYKYLQILESYDQ 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 901825 914503 + Sed0021395.1 Sed08g0166 721942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0166 815 Pfam Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain 514 804 IPR024732 -
Sed08g0166 815 Gene3D - 508 814 - -
Sed08g0166 815 Gene3D - 31 152 IPR029018 -
Sed08g0166 815 Pfam Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain 51 146 IPR024240 -
Sed08g0166 815 PANTHER ALPHA-N-ACETYLGLUCOSAMINIDASE 9 809 IPR007781 -
Sed08g0166 815 Pfam Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain 163 505 IPR024733 -
Sed08g0166 815 Gene3D Glycosidases 158 506 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0166 K01205 - - csv:101210507 1504.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0166 Sed-Chr8:901825 Sed09g1361 Sed-Chr9:37655282 3.00E-280 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g686 . . . . Bpe12g00578 . . . . . . . . Car11g00115 Sed08g0166 . Cpe04g01535 Bhi02g00394 Tan09g2200 Cmetu02g0643 . Hepe09g0169 . . Cla06g01635 Cam06g1818 Cec06g1868 Cco06g1874 Clacu06g1776 Cmu06g1718 Cre06g2538 . . . Cone19ag0121 . . . . . . . . . . . Bma08g00184 . . Cmo11g00122 . . . . . . . . . . . . . . . . . . . . Lsi06g01519 Csa01g00181 Chy02g02551 Cme02g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002283 1 4 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 61