Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0168 | ATGGCGATTTCCATTCCCGATCGGCAACTCTTCATCGGCGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCGTCGTCAACCCCGCCACTGAAGAAACCATCGGTTCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCGGTTGATGCTGCTAGGAAGGCTCTAGCGAGGAATAAGGGCAAGGATTGGGCCTCTGCTTCGGGAGCTGTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAGCTTGAAACTATAGACTGTGGAAAACCCCTGGAAGAAGCTGCTTGGGACATGGATGATGTTGCTGGGTGCTTCGAGTACTACGCAGAACTTGCCGAAGGGTTGGATGCAAAGCAAAAAACTCCTGTTTCAGTTCCCATGGATACATTCAAGACCTATGTTCTTAAAGAACCCATTGGAGTCGTTGCGTTGATTACCCCTTGGAACTATCCTCTATTGATGGCTGTATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCATCAGAATTGGCATCTGTCACCTGTTTGGAGCTGGCCGAGATCTGTAAAGATGTTGGTCTTCCTCCTGGCATTTTGAATATTCTGACAGGATATGGCCCTGAAGCTGGTGCTCCTCTAGCTTCTCATCCTCACGTTGACAAGGTTGCATTTACTGGGAGTGGTGCCACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGGAAGAGTCCGATTGTTATTTTTGAGGATGTCGACCTTGATAAGGCTGCCGAATGGACAATATTTGGTTGCTTTTGGACAAACGGTCAGATTTGTAGTGCCACATCCCGTCTAATTATCCATGAAAACGTTGCTGATGAATTCTTGGATAAGCTCGTGCAATGGTGCAAGAACATTAAGATTTCAGATCCTTTTGAAGAAGGTTGCAGGCTTGGTCCTGTTGTTAGTGCAGGACAGTATGAGAAAGTATTGAAGTTTGTCTCAACTGCTGAGAGCGAAGGTGCGAAGATTCAATATGGTGGAGTTCGCCCTAAGCATCTAAAGAAGGGATACTTCGTTGAACCGACCATTATTACCAATGTTACAACCTCCATGCAAATATGGAGAGAAGAAGTCTTTGGACCTGTTCTATGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATAGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTGATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGATTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAATTAGGGGAATGGGGACTTGATAACTATCTGACAGTGAAGCAGGTCACTCAGTATGTTTCAGATGAGCCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA | 1512 | 46.03 | MAISIPDRQLFIGGEWREPVLKKRIPVVNPATEETIGSIPAATAEDVELAVDAARKALARNKGKDWASASGAVRAKYLRAIAAKITERKSELAKLETIDCGKPLEEAAWDMDDVAGCFEYYAELAEGLDAKQKTPVSVPMDTFKTYVLKEPIGVVALITPWNYPLLMAVWKVAPALAAGCAAILKPSELASVTCLELAEICKDVGLPPGILNILTGYGPEAGAPLASHPHVDKVAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVIFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIIHENVADEFLDKLVQWCKNIKISDPFEEGCRLGPVVSAGQYEKVLKFVSTAESEGAKIQYGGVRPKHLKKGYFVEPTIITNVTTSMQIWREEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWINCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTQYVSDEPWGWYKSPSKL | 503 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 923304 | 934389 | + | Sed0010361.1 | Sed08g0168 | 721944 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0168 | 503 | Pfam | Aldehyde dehydrogenase family | 17 | 485 | IPR015590 | GO:0016491(InterPro) | |
Sed08g0168 | 503 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 267 | 458 | IPR016163 | GO:0016620(InterPro) | |
Sed08g0168 | 503 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 259 | 266 | IPR029510 | GO:0016491(InterPro) | |
Sed08g0168 | 503 | SUPERFAMILY | ALDH-like | 5 | 488 | IPR016161 | GO:0016491(InterPro) | |
Sed08g0168 | 503 | FunFam | Betaine aldehyde dehydrogenase | 263 | 454 | - | - | |
Sed08g0168 | 503 | CDD | ALDH_F10_BADH | 27 | 487 | - | - | |
Sed08g0168 | 503 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 24 | 483 | IPR016162 | GO:0016491(InterPro) | |
Sed08g0168 | 503 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 287 | 298 | IPR016160 | GO:0016491(InterPro) | |
Sed08g0168 | 503 | PANTHER | BETAINE ALDEHYDE DEHYDROGENASE | 1 | 502 | - | - | |
Sed08g0168 | 503 | FunFam | NAD/NADP-dependent betaine aldehyde dehydrogenase | 12 | 277 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3105 | Sed-Chr4:41960692 | Sed08g0168 | Sed-Chr8:923304 | 2.30E-59 | dispersed | |
Sed04g3106 | Sed-Chr4:41960692 | Sed08g0168 | Sed-Chr8:923304 | 3.20E-57 | dispersed | |
Sed05g3313 | Sed-Chr5:42467690 | Sed08g0168 | Sed-Chr8:923304 | 1.00E-90 | dispersed | |
Sed08g0168 | Sed-Chr8:923304 | Sed12g1882 | Sed-Chr12:30009036 | 2.20E-100 | dispersed | |
Sed08g0168 | Sed-Chr8:923304 | Sed08g0169 | Sed-Chr8:923304 | 8.50E-278 | tandem | |
Sed12g1906 | Sed-Chr12:30211078 | Sed08g0168 | Sed-Chr8:923304 | 1.40E-280 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0168 | K00130 | - | csv:101213657 | 953.355 |