Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0168 ATGGCGATTTCCATTCCCGATCGGCAACTCTTCATCGGCGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCGTCGTCAACCCCGCCACTGAAGAAACCATCGGTTCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCGGTTGATGCTGCTAGGAAGGCTCTAGCGAGGAATAAGGGCAAGGATTGGGCCTCTGCTTCGGGAGCTGTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAGCTTGAAACTATAGACTGTGGAAAACCCCTGGAAGAAGCTGCTTGGGACATGGATGATGTTGCTGGGTGCTTCGAGTACTACGCAGAACTTGCCGAAGGGTTGGATGCAAAGCAAAAAACTCCTGTTTCAGTTCCCATGGATACATTCAAGACCTATGTTCTTAAAGAACCCATTGGAGTCGTTGCGTTGATTACCCCTTGGAACTATCCTCTATTGATGGCTGTATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCATCAGAATTGGCATCTGTCACCTGTTTGGAGCTGGCCGAGATCTGTAAAGATGTTGGTCTTCCTCCTGGCATTTTGAATATTCTGACAGGATATGGCCCTGAAGCTGGTGCTCCTCTAGCTTCTCATCCTCACGTTGACAAGGTTGCATTTACTGGGAGTGGTGCCACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGGAAGAGTCCGATTGTTATTTTTGAGGATGTCGACCTTGATAAGGCTGCCGAATGGACAATATTTGGTTGCTTTTGGACAAACGGTCAGATTTGTAGTGCCACATCCCGTCTAATTATCCATGAAAACGTTGCTGATGAATTCTTGGATAAGCTCGTGCAATGGTGCAAGAACATTAAGATTTCAGATCCTTTTGAAGAAGGTTGCAGGCTTGGTCCTGTTGTTAGTGCAGGACAGTATGAGAAAGTATTGAAGTTTGTCTCAACTGCTGAGAGCGAAGGTGCGAAGATTCAATATGGTGGAGTTCGCCCTAAGCATCTAAAGAAGGGATACTTCGTTGAACCGACCATTATTACCAATGTTACAACCTCCATGCAAATATGGAGAGAAGAAGTCTTTGGACCTGTTCTATGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATAGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTGATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGATTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAATTAGGGGAATGGGGACTTGATAACTATCTGACAGTGAAGCAGGTCACTCAGTATGTTTCAGATGAGCCATGGGGATGGTACAAATCTCCTTCTAAACTGTAA 1512 46.03 MAISIPDRQLFIGGEWREPVLKKRIPVVNPATEETIGSIPAATAEDVELAVDAARKALARNKGKDWASASGAVRAKYLRAIAAKITERKSELAKLETIDCGKPLEEAAWDMDDVAGCFEYYAELAEGLDAKQKTPVSVPMDTFKTYVLKEPIGVVALITPWNYPLLMAVWKVAPALAAGCAAILKPSELASVTCLELAEICKDVGLPPGILNILTGYGPEAGAPLASHPHVDKVAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVIFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIIHENVADEFLDKLVQWCKNIKISDPFEEGCRLGPVVSAGQYEKVLKFVSTAESEGAKIQYGGVRPKHLKKGYFVEPTIITNVTTSMQIWREEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWINCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTQYVSDEPWGWYKSPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 923304 934389 + Sed0010361.1 Sed08g0168 721944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0168 503 Pfam Aldehyde dehydrogenase family 17 485 IPR015590 GO:0016491(InterPro)
Sed08g0168 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
Sed08g0168 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
Sed08g0168 503 SUPERFAMILY ALDH-like 5 488 IPR016161 GO:0016491(InterPro)
Sed08g0168 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Sed08g0168 503 CDD ALDH_F10_BADH 27 487 - -
Sed08g0168 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
Sed08g0168 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
Sed08g0168 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 502 - -
Sed08g0168 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3105 Sed-Chr4:41960692 Sed08g0168 Sed-Chr8:923304 2.30E-59 dispersed
Sed04g3106 Sed-Chr4:41960692 Sed08g0168 Sed-Chr8:923304 3.20E-57 dispersed
Sed05g3313 Sed-Chr5:42467690 Sed08g0168 Sed-Chr8:923304 1.00E-90 dispersed
Sed08g0168 Sed-Chr8:923304 Sed12g1882 Sed-Chr12:30009036 2.20E-100 dispersed
Sed08g0168 Sed-Chr8:923304 Sed08g0169 Sed-Chr8:923304 8.50E-278 tandem
Sed12g1906 Sed-Chr12:30211078 Sed08g0168 Sed-Chr8:923304 1.40E-280 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0168 K00130 - csv:101213657 953.355