Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0169 ATGGCGATTTCCATTCCCGATCGGCAACTCTTCATCGGCGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCGTCGTCAACCCCGCCACTGAAGAAACCATCGGTTCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCGGTTGATGCTGCTAGGAAGGCTCTAGCGAGGAATAAGGGCAAGGATTGGGCCTCTGCTTCGGGAGCTGTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAATTAGCAAAGCTTGAAACTATAGACTGTGGAAAACCCCTGGAAGAAGCTGCTTGGGACATGGATGATGTTGCTGGGTGCTTCGAGTACTACGCAGAACTTGCCGAAGGGTTGGATGCAAAGCAAAAAACTCCTGTTTCAGTTCCCATGGATACATTCAAGACCTATGTTCTTAAAGAACCCATTGGAGTCGTTGCGTTGATTACCCCTTGGAACTATCCTCTATTGATGGCTGTATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCATCAGAATTGGCATCTGTCACCTGTTTGGAGCTGGCCGAGATCTGTAAAGATGTTGGTCTTCCTCCTGGCATTTTGAATATTCTGACAGGATATGGCCCTGAAGCTGGTGCTCCTCTAGCTTCTCATCCTCACGTTGACAAGGTTGCATTTACTGGGAGTGGTGCCACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGGAAGAGTCCGATTGTTATTTTTGAGGATGTCGACCTTGATAAGGCTGCCGAATGGACAATATTTGGTTGCTTTTGGACAAACGGTCAGATTTGTAGTGCCACATCCCGTCTAATTATCCATGAAAACGTTGCTGATGAATTCTTGGATAAGCTCGTGCAATGGTGCAAGAACATTAAGATTTCAGATCCTTTTGAAGAAGGTTGCAGGCTTGGTCCTGTTGTTAGTGCAGGACAGTATGAGAAAGTATTGAAGTTTGTCTCAACTGCTGAGAGCGAAGGTGCGAAGATTCAATATGGTGGAGTTCGCCCTAAGCATCTAAAGAAGGGATACTTCGTTGAACCGACCATTATTACCAATGTTACAACCTCCATGCAAATATGGAGAGAAGAAGTCTTTGGACCTGTTCTATGTGTGAAGACTTTTAGTTCTGAAGATGAAGCTATAGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTGATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGATTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAATTAGGGGAATGGTGTGCTCCCCTCAAGATCCCAAGTTCAAGATTCACCTATGACATTAATTTGGGGACATCTTCCGTGTTTCCATTCCTTCGATGTCTCTCGATGCTTGGCCTAAGGAAAATTTTTCTTAGGACAATTTTCAAATTTTCAAGCCTACTAAGGAGGGGAGTATTGATTGATATAATTAAATTTACCTCAATCTATCGACTTAAGTTTAGTTCATGA 1635 45.08 MAISIPDRQLFIGGEWREPVLKKRIPVVNPATEETIGSIPAATAEDVELAVDAARKALARNKGKDWASASGAVRAKYLRAIAAKITERKSELAKLETIDCGKPLEEAAWDMDDVAGCFEYYAELAEGLDAKQKTPVSVPMDTFKTYVLKEPIGVVALITPWNYPLLMAVWKVAPALAAGCAAILKPSELASVTCLELAEICKDVGLPPGILNILTGYGPEAGAPLASHPHVDKVAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPIVIFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIIHENVADEFLDKLVQWCKNIKISDPFEEGCRLGPVVSAGQYEKVLKFVSTAESEGAKIQYGGVRPKHLKKGYFVEPTIITNVTTSMQIWREEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWINCSQPCFTQAPWGGNKRSGFGRELGEWCAPLKIPSSRFTYDINLGTSSVFPFLRCLSMLGLRKIFLRTIFKFSSLLRRGVLIDIIKFTSIYRLKFSS 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 923304 934389 + Sed0010361.2 Sed08g0169 721945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0169 544 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Sed08g0169 544 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Sed08g0169 544 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
Sed08g0169 544 CDD ALDH_F10_BADH 27 474 - -
Sed08g0169 544 SUPERFAMILY ALDH-like 5 472 IPR016161 GO:0016491(InterPro)
Sed08g0169 544 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 475 - -
Sed08g0169 544 Pfam Aldehyde dehydrogenase family 17 474 IPR015590 GO:0016491(InterPro)
Sed08g0169 544 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
Sed08g0169 544 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 474 IPR016162 GO:0016491(InterPro)
Sed08g0169 544 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0169 Sed-Chr8:923304 Sed12g1906 Sed-Chr12:30211078 9.30E-262 dispersed
Sed08g0168 Sed-Chr8:923304 Sed08g0169 Sed-Chr8:923304 8.50E-278 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0169 K00130 - csv:101213657 893.264