Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sed08g0172	ATGGCGTCGGCCGGAGAGCTCCGCCGCCGCACCCCCACCGGCGAACTTGTTGATGGGGTTTCCGATGATTCGAGGGAGCTTCATGTTCTTGCTGTTGATGACAGCCTCGTGGATCGCAAGGTTATTGAGCGCTTGCTGAAGATTTCGTCCTGTAAAGTTACTGTTGTTGAAAGTGGGAGGAGTGCTTTGCAATTTCTGGGTTTGGATGGTGAAACTAGTTCTATGCAGTTTGATGGTTTGCAAGTGAATCTGATAATCACTGATTACTCCATGCCTGAAATGACAGGATATGAATTGCTCAAGAAGATTAAGGAATCATCAGCTTTCAGGGAAATTCCTGTTGTGATAATGTCATCAGAGAACATTTTGGCTCGAATCGACAACTGCTTGAATGAAGGGGCTGAAGATTTCTTAGTGAAGCCTGTGAAACTGTCTGATGTCAAACGATTGAAAGATTTCATTGTGAAGGGAGAAAATGCAGTGAAGAAAATTGGTGTCAAGAGAAAACGCCATCTTGATCATGATCACAATCCCTCGTCTCCGAGGTCTCCAGCGTTACCGATGGCAGCTTCCGACCATTGCCAAGGAATTTTGTCACAATCATCGCCGCCATCGTTACCGGTCACATGTTCATCGAAGAAACCCAGGGTTTTCGATGAGGACTAA	666	45.95	MASAGELRRRTPTGELVDGVSDDSRELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGRSALQFLGLDGETSSMQFDGLQVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDNCLNEGAEDFLVKPVKLSDVKRLKDFIVKGENAVKKIGVKRKRHLDHDHNPSSPRSPALPMAASDHCQGILSQSSPPSLPVTCSSKKPRVFDED	221

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	951671	953769	+	Sed0010657.1	Sed08g0172	721948

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sed08g0172	221	MobiDBLite	consensus disorder prediction	194	209	-	-
	Sed08g0172	221	CDD	REC_typeA_ARR	29	150	-	-
	Sed08g0172	221	Pfam	Response regulator receiver domain	29	147	IPR001789	GO:0000160(InterPro)
	Sed08g0172	221	MobiDBLite	consensus disorder prediction	169	221	-	-
	Sed08g0172	221	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	24	185	IPR045279	GO:0009736(InterPro)
	Sed08g0172	221	ProSiteProfiles	Response regulatory domain profile.	28	155	IPR001789	GO:0000160(InterPro)
	Sed08g0172	221	SMART	REC_2	27	151	IPR001789	GO:0000160(InterPro)
	Sed08g0172	221	Gene3D	-	27	193	-	-
	Sed08g0172	221	SUPERFAMILY	CheY-like	26	152	IPR011006	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Sed06g1597	Sed-Chr6:40795287	Sed08g0172	Sed-Chr8:951671	4.60E-48	dispersed
	Sed08g0172	Sed-Chr8:951671	Sed12g1910	Sed-Chr12:30226674	2.80E-71	dispersed
	Sed12g1909	Sed-Chr12:30226674	Sed08g0172	Sed-Chr8:951671	1.40E-75	wgd
	Sed04g0660	Sed-Chr4:5217170	Sed08g0172	Sed-Chr8:951671	2.90E-49	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	39244	PF00072	Response_reg	1.10E-20	CL0304	Sed	TR

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sed08g0172	K14492		-	csv:101214143	288.5