Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0179 ATGCGAAGCTTCAACGCCGCCGTCAACGAATCTGCGGCCGCCGAGACCGGTGGCGGCGGTCCCAGTGAAATCATGCTGTTTGGCGTCAGAGTGGTGGTGGATTCGATGAGGAAGAGCGTGAGTTTGAACAATCTGTCGCAGTATGAGCAGCCTCATGATGTAATCGGAAACGAAAACAAGAGCGACCTTGTTTCCGTCAATAACAAAGACGATGTTGCCGCTGGATACGCCTCCGCGGATGATGCTGTTCGTGGAAATCGCGAACGTGAGCGCAAGCGAGGTGTGCCTTGGACTGAGGAAGAACACAAGCTGTTCTTAATTGGACTGCAACAAGTAGGAAAGGGGGATTGGAGAGGAATTTCTAGGAACTTTGTTAAGACTCGCACACCAACTCAGGTCGCTAGCCATGCTCAGAAATACTACCTTCGCCGTAGCAATCTGAATCGCCGTCGCCGTAGATCCAGTCTTTTCGATATCACGACGGACACGGTAACATCCGATCCAATGGTTGAAGAGCCGGTGCAGCGCCAAGAAATTGCCTCTCAATCCCATTCCTTTACTCTGTCAAACCTACCCAAAACTTCCAAGAACAAAGGAATTCCAATGGTTCAAACTTTCCCACTTTCTTTTGGGCCATCACCATTAACCATTCCAACCAAGAATCTGATGGAAAAGTGTGGTGGTCCAGGAGAAGTAAATACACAAAATGATGGACCACTGAATCTTATCCTCAAGGATTCCATCTTTTCCTCTCATCGAACTCCAACCTCGACTGGTTTGAACTTGAATTCAAACACAGCAATGGAGTCATCAGCTCTATCGCTTCGCCTTTCCTTAACATCGGATCAAAGGGAGGCTTCATCAAGACATTCAACTTTCCAATCCATGCCAAGTTTCAATCACGGTGAAGGTATCATTAGTGCTGCTTAA 930 47.85 MRSFNAAVNESAAAETGGGGPSEIMLFGVRVVVDSMRKSVSLNNLSQYEQPHDVIGNENKSDLVSVNNKDDVAAGYASADDAVRGNRERERKRGVPWTEEEHKLFLIGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYYLRRSNLNRRRRRSSLFDITTDTVTSDPMVEEPVQRQEIASQSHSFTLSNLPKTSKNKGIPMVQTFPLSFGPSPLTIPTKNLMEKCGGPGEVNTQNDGPLNLILKDSIFSSHRTPTSTGLNLNSNTAMESSALSLRLSLTSDQREASSRHSTFQSMPSFNHGEGIISAA 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 998775 1001531 + Sed0001396.1 Sed08g0179 721955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0179 309 MobiDBLite consensus disorder prediction 280 301 - -
Sed08g0179 309 ProSiteProfiles Myb-like domain profile. 89 141 IPR001005 -
Sed08g0179 309 Pfam Myb-like DNA-binding domain 95 140 IPR001005 -
Sed08g0179 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 143 IPR006447 GO:0003677(InterPro)
Sed08g0179 309 Gene3D - 95 147 - -
Sed08g0179 309 FunFam transcription factor MYB1R1 95 146 - -
Sed08g0179 309 CDD SANT 96 140 IPR001005 -
Sed08g0179 309 ProSiteProfiles SANT domain profile. 92 145 IPR017884 -
Sed08g0179 309 SMART sant 93 143 IPR001005 -
Sed08g0179 309 SUPERFAMILY Homeodomain-like 91 146 IPR009057 -
Sed08g0179 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 145 IPR017930 -
Sed08g0179 309 MobiDBLite consensus disorder prediction 280 309 - -
Sed08g0179 309 PANTHER TRANSCRIPTION FACTOR KUA1 19 196 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0179 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0179 Sed-Chr8:998775 Sed09g1612 Sed-Chr9:39614819 1.70E-34 dispersed
Sed12g1912 Sed-Chr12:30256528 Sed08g0179 Sed-Chr8:998775 9.60E-112 wgd
Sed04g0665 Sed-Chr4:5258186 Sed08g0179 Sed-Chr8:998775 4.30E-45 wgd
Sed08g0179 Sed-Chr8:998775 Sed08g2551 Sed-Chr8:38125977 2.10E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g672 Blo04g00752 . . Bda15g00706 Bpe12g00497 . . . . . . . . . Sed08g0179 . Cpe04g01530 Bhi02g00380 Tan09g2185 Cmetu02g0204 . Hepe09g0159 . . Cla06g01627 Cam06g1808 Cec06g1859 Cco06g1865 Clacu06g1768 Cmu06g1711 Cre06g2530 Cone2ag0877 . Cone13ag0104 . Lsi02g00340 Csa01g00811 . . Blo13g00036 . Bda11g01577 . Bpe07g00811 Bpe15g00619 . . . . . . . . . . Cpe18g00819 . . . . . . . . . . . . . . Lsi06g01508 . Chy02g02541 Cme02g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005075 1 1 2 0 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39245 PF00249 Myb_DNA-binding 1.90E-10 CL0123 Sed TF