Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0180 ATGGTGTCTGCATCGACTCGTCGCAAGAACATGCACTCCCTTCTAGTAGCCAATCTCACAAAGCTCACCATCCCTTCATCGTCGTCCTCTTCTTCTTCTTCAACCGCCGCCGCCGTTCACGACTTCGATTTCTCCGACGTGTTTGGCCCTTCTCCGGCGGATTCGAAGCATCACGAACAACAGCCGGAGGTTATTCACAACAGATCTCACTCGTTTGTGGGTCCTTCTCCCAGGTTAACCCCCCCTTCGTCCCTTCCGTTTTTCCGAGGAGTGGAATTACAGAGCGATGAGGAGGAAGATGAAGCTGAAATCGCGACGGGTGGTAATGGAGATTTACAGGAGGGGGAGGTTGAAGAAGAAGAAAATGCTGTGCAGGGGAAGATTGGGGTTGGGGATTTCGAGATTGTTCGAGTGGTGGGAAAAGGGGCGTTTGGGAAGGTGTTTTTGGTGAGGAAGAGAGGGGATGGTAAGGGTAATGGGTTGAATAATGATGGGATTTATGCTATGAAAGTGATGAGGAAGGATACTGTTATTAAGAAGAATCATGTGGATTATATGAAGGCTGAGAGAGATATTCTCACTAAAGTTGCTCATCCTTTCATTGTTCAACTCCGCTACTCTTTCCAGACCAAATCGAAACTTTATTTGATTCTTGATTTCATAAATGGGGGCCATCTCTTTTACCATCTCTACCGGCAGGGAATCTTTAGTGAGGATCAGGCAAGGGTCTATGCTGCTGAGATTGTTTCGGCTGTTTCTCACCTTCACGACTGCGGTATTGTGCACCGGGATCTCAAGCCGGAGAACATTCTCATGGATGCTGATGGCCATGTAGTGCTTACAGATTTTGGACTGGCTAAGGAAATTGATGAATCAAGTCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGGCACAACAAAGATGCAGATTGGTGGAGCGTTGGAATCCTCTTGTATGAAATGCTTAGTGGCCAGCCCCCATTCACACATGCTAATAGGAAGAAGCTTCAAGAAAGGATAATCAAAGAGAAAGTGAAGCTTCCACCATGCCTGAGCACTGACGCTCACTCTTTACTTAGAGGGCTGCTTCAAAAGGAGCCTTCTAAAAGATTAGGTAGCGGACCCGATGGCGGGGCCGAGATAAAAAGTCATAAGTGGTTTCGACCAGTGAACTGGAAGAAATTGGAATGCAGGGAGCTGCAGCCAAAATTCAAGCCGGATGTCAATGGGAATGACTGCACGGCAAATTTCGATAACTGTTGGACAGCGATGCCCCCAGATGACTCGCCAGCTCCAACGCCAACCGACGGTGGCCACTTCCATGGATATACTTATGTTGCTCCAAACCCTTGGCTTTCATCATCTGGATAG 1401 47.61 MVSASTRRKNMHSLLVANLTKLTIPSSSSSSSSSTAAAVHDFDFSDVFGPSPADSKHHEQQPEVIHNRSHSFVGPSPRLTPPSSLPFFRGVELQSDEEEDEAEIATGGNGDLQEGEVEEEENAVQGKIGVGDFEIVRVVGKGAFGKVFLVRKRGDGKGNGLNNDGIYAMKVMRKDTVIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHDCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGILLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPCLSTDAHSLLRGLLQKEPSKRLGSGPDGGAEIKSHKWFRPVNWKKLECRELQPKFKPDVNGNDCTANFDNCWTAMPPDDSPAPTPTDGGHFHGYTYVAPNPWLSSSG 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1003832 1007378 - Sed0017472.1 Sed08g0180 721956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0180 466 FunFam Non-specific serine/threonine protein kinase 130 244 - -
Sed08g0180 466 ProSiteProfiles Protein kinase domain profile. 133 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0180 466 FunFam Non-specific serine/threonine protein kinase 221 416 - -
Sed08g0180 466 SUPERFAMILY Protein kinase-like (PK-like) 130 455 IPR011009 -
Sed08g0180 466 CDD STKc_AGC 139 397 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Sed08g0180 466 ProSitePatterns Protein kinases ATP-binding region signature. 139 170 IPR017441 GO:0005524(InterPro)
Sed08g0180 466 SMART serkin_6 133 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0180 466 ProSiteProfiles AGC-kinase C-terminal domain profile. 398 465 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0180 466 Gene3D Phosphorylase Kinase; domain 1 132 439 - -
Sed08g0180 466 SMART pkinase_C_6 398 457 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0180 466 Gene3D Transferase(Phosphotransferase) domain 1 221 416 - -
Sed08g0180 466 MobiDBLite consensus disorder prediction 44 123 - -
Sed08g0180 466 Pfam Protein kinase C terminal domain 418 455 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0180 466 PANTHER RIBOSOMAL PROTEIN S6 KINASE 96 459 - -
Sed08g0180 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0180 466 Pfam Protein kinase domain 133 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2218 Sed-Chr7:38058642 Sed08g0180 Sed-Chr8:1003832 6.20E-55 dispersed
Sed07g2219 Sed-Chr7:38058642 Sed08g0180 Sed-Chr8:1003832 7.80E-55 dispersed
Sed08g0180 Sed-Chr8:1003832 Sed08g1996 Sed-Chr8:34316100 1.90E-61 dispersed
Sed02g0141 Sed-Chr2:30910012 Sed08g0180 Sed-Chr8:1003832 8.60E-134 transposed
Sed04g2660 Sed-Chr4:39043080 Sed08g0180 Sed-Chr8:1003832 9.50E-12 transposed
Sed01g1699 Sed-Chr1:12347214 Sed08g0180 Sed-Chr8:1003832 2.70E-44 wgd
Sed12g1913 Sed-Chr12:30259913 Sed08g0180 Sed-Chr8:1003832 8.60E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79580 PF00069 Pkinase 4.90E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0180 K04688 - csv:101214867 772.696