Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0183 ATGGTTGCTTTCACAAGCTTCTCTTTTAACATGCTTGGTTGCTTCATTATATTGTTGCTTCTTCCTTATCGGTCTTTGTCGGCCGACCCCGATCCGTTGCAGGATTTCTGTGTAGCTGATTTGAATGCTACTATATCAGTTAATGGCTTCCCTTGCAAACCAGCCTCAAAAGTTACATCAGATGATTTCTTCTTTGATGGATTGAGCAAAGAGGGCAACACAGACAATCCTTCTGGTTTTGCAGTTGCACAAGGAAATGTTCTTACATTTCCAGGACTCAATACACTTGGTCTGGCCATGAACCGTGTCGACCTCGCTCCTCGAGGAATAAATTCGCCTCACTCGCATCCTCGTGCAACCGAAAGCATCGTCGTGATTAAGGGGAAGGTTCTTGTTGGATTTGTGTCAACAAGTAATGTGTACTATTATAAGGTTTTGACTGCTGGGCAGATGTTTGTCATTCCTAGAGGACTTGTTCATTTCCAGTATAATGTTGGACATGGCAAAGCTACCTTGCTCACAGCTTTCAACAGTCAGTTGCCAGGGGCTGCGATCATCTCTCGAACTTTGTTTGCTTCGAACCCTCCGATCCCTGTCGAAATTCTGAGCAAGGCCTTCCAAGTTGATGATGATGTTATCAACAAAATAAAGTCAAAGTTTGCTTAG 666 43.69 MVAFTSFSFNMLGCFIILLLLPYRSLSADPDPLQDFCVADLNATISVNGFPCKPASKVTSDDFFFDGLSKEGNTDNPSGFAVAQGNVLTFPGLNTLGLAMNRVDLAPRGINSPHSHPRATESIVVIKGKVLVGFVSTSNVYYYKVLTAGQMFVIPRGLVHFQYNVGHGKATLLTAFNSQLPGAAIISRTLFASNPPIPVEILSKAFQVDDDVINKIKSKFA 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1017971 1019256 + Sed0001392.1 Sed08g0183 721959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0183 221 Pfam Cupin 67 211 IPR006045 -
Sed08g0183 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 26 220 - GO:0005618(PANTHER)
Sed08g0183 221 CDD cupin_OxOx 29 220 IPR001929 GO:0030145(InterPro)
Sed08g0183 221 SMART Cupin_1_3 66 214 IPR006045 -
Sed08g0183 221 FunFam germin-like protein subfamily 2 member 1 28 221 - -
Sed08g0183 221 Gene3D Jelly Rolls 28 221 IPR014710 -
Sed08g0183 221 SUPERFAMILY RmlC-like cupins 29 220 IPR011051 -
Sed08g0183 221 PRINTS Germin signature 114 134 IPR001929 GO:0030145(InterPro)
Sed08g0183 221 PRINTS Germin signature 177 192 IPR001929 GO:0030145(InterPro)
Sed08g0183 221 PRINTS Germin signature 144 164 IPR001929 GO:0030145(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0183 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0377 Sed-Chr4:2718664 Sed08g0183 Sed-Chr8:1017971 1.30E-50 dispersed
Sed08g0183 Sed-Chr8:1017971 Sed10g0053 Sed-Chr10:339987 3.90E-57 dispersed
Sed12g1915 Sed-Chr12:30293089 Sed08g0183 Sed-Chr8:1017971 4.40E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g471 . . . . Bpe12g00568 . . . . . Cma10g00163 Cma11g00176 . . Sed08g0183 . . Bhi02g00376 Tan09g2181 Cmetu02g1544 . Hepe09g0155 . . Cla06g01623 Cam06g1804 Cec06g1855 Cco06g1861 Clacu06g1764 Cmu06g1708 Cre06g2526 . . Cone13ag0100 Cone19ag0104 . . . . Blo13g00033 . . . . . . Bma08g00195 . Cmo10g00175 Cmo11g00133 . . . . . . . . . . . . . . . . . . . . Lsi06g01504 Csa01g00195 Chy02g02537 Cme02g01921
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004893 1 2 1 1 1 2 0 2 2 2 1 2 1 2 2 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 41