Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0184 ATGGACCCTCCCCTCGTCAATGAATCCTCCTTCTCCGTTGCCAATCCCTCTTCCTACAGCTTGGCCGCAATTTGGCCCTTCGTCGGGGACCCCGGGATGGGGCTCCGAATGGATCCTTCGGGTCGGAATCTTGGTGGGTTTTTGGAGAGCTCCATGAATCGTGATGGGTCGGTGGAGGAATCGACGGTGACGGAGCAGAGCGGCGGTGGGGGGTGGAAGAGGAAGGATGTCAGCTCTGAGGATGAATCTTCCAGATTGGTTTCCACCAGTAGTGCCACTGCCAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGATGGGATTAAAGCTGAAGTAAAATGTAGCTCAGCAGATGGTGAGAAGCTGGCCGAGCAAAGCCCGAAACCTTCCGAACCACAAAAGGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGAGAGAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCATTGCAACATCAGGTCGAGTTCCTCTCCATGAAGCTTGAAACTGTGAATTCCAGGATGAACATAAGCCCTGTCAGAGAAGGTCTTACTGTGAAAAATATTGTTAATCAACCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAGCAAAAGAATATAGCCAAATTACACAACCTGAATGGTTGCATATGCAGATTGGTGGAAGTTTTGAAAGAACATCTTAG 834 46.04 MDPPLVNESSFSVANPSSYSLAAIWPFVGDPGMGLRMDPSGRNLGGFLESSMNRDGSVEESTVTEQSGGGGWKRKDVSSEDESSRLVSTSSATANQLSNSNGKRMKVVESRDENDGIKAEVKCSSADGEKLAEQSPKPSEPQKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLETVNSRMNISPVREGLTVKNIVNQPYDAAGILYGSQAAKEYSQITQPEWLHMQIGGSFERTS 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1019787 1023312 - Sed0020735.1 Sed08g0184 721960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0184 277 FunFam Basic helix-loop-helix transcription factor 151 223 - -
Sed08g0184 277 MobiDBLite consensus disorder prediction 83 104 - -
Sed08g0184 277 MobiDBLite consensus disorder prediction 54 68 - -
Sed08g0184 277 Pfam Helix-loop-helix DNA-binding domain 158 205 IPR011598 GO:0046983(InterPro)
Sed08g0184 277 MobiDBLite consensus disorder prediction 105 143 - -
Sed08g0184 277 Coils Coil 201 221 - -
Sed08g0184 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 223 IPR036638 GO:0046983(InterPro)
Sed08g0184 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 204 IPR011598 GO:0046983(InterPro)
Sed08g0184 277 MobiDBLite consensus disorder prediction 39 143 - -
Sed08g0184 277 Gene3D - 151 225 IPR036638 GO:0046983(InterPro)
Sed08g0184 277 CDD bHLH_AtBPE_like 144 226 - -
Sed08g0184 277 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 68 225 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed08g0184 277 SMART finulus 160 210 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0184 Sed-Chr8:1019787 Sed12g0702 Sed-Chr12:4204407 2.90E-38 dispersed
Sed08g0184 Sed-Chr8:1019787 Sed08g0185 Sed-Chr8:1019787 8.70E-99 tandem
Sed03g1894 Sed-Chr3:12901700 Sed08g0184 Sed-Chr8:1019787 4.10E-59 transposed
Sed12g1916 Sed-Chr12:30294831 Sed08g0184 Sed-Chr8:1019787 1.30E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39246 PF00010 HLH 2.20E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0184 - - - 0.0