Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0185 ATGGACCCTCCCCTCGTCAATGAATCCTCCTTCTCCGTTGCCAATCCCTCTTCCTACAGCTTGGCCGCAATTTGGCCCTTCGTCGGGGACCCCGGGATGGGGCTCCGAATGGATCCTTCGGGTCGGAATCTTGGTGGGTTTTTGGAGAGCTCCATGAATCGTGATGGGTCGGTGGAGGAATCGACGGTGACGGAGCAGAGCGGCGGTGGGGGGTGGAAGAGGAAGGATGTCAGCTCTGAGGATGAATCTTCCAGATTGGTTTCCACCAGTAGTGCCACTGCCAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGATGGGATTAAAGCTGAAGTAAAATGTAGCTCAGCAGATGGTGAGAAGCTGGCCGAGCAAAGCCCGAAACCTTCCGAACCACAAAAGGATTACATCCATGTGAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGAGAGAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTACACTTTCTGTTTTTTTTTTTGTCTGCTAGTAGTGATTTGGGGAAAATTGCAAAACCACCCTGTACTACTACAGTAAGTGCAATTTTATTTTTGAACTTTTAA 663 47.66 MDPPLVNESSFSVANPSSYSLAAIWPFVGDPGMGLRMDPSGRNLGGFLESSMNRDGSVEESTVTEQSGGGGWKRKDVSSEDESSRLVSTSSATANQLSNSNGKRMKVVESRDENDGIKAEVKCSSADGEKLAEQSPKPSEPQKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVHFLFFFLSASSDLGKIAKPPCTTTVSAILFLNF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1019787 1023312 - Sed0020735.2 Sed08g0185 721961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0185 220 MobiDBLite consensus disorder prediction 83 104 - -
Sed08g0185 220 MobiDBLite consensus disorder prediction 39 118 - -
Sed08g0185 220 Pfam Helix-loop-helix DNA-binding domain 158 183 IPR011598 GO:0046983(InterPro)
Sed08g0185 220 Gene3D - 144 204 IPR036638 GO:0046983(InterPro)
Sed08g0185 220 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 68 187 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed08g0185 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 220 IPR011598 GO:0046983(InterPro)
Sed08g0185 220 MobiDBLite consensus disorder prediction 54 68 - -
Sed08g0185 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 186 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0185 Sed-Chr8:1019787 Sed12g1916 Sed-Chr12:30294831 1.10E-64 dispersed
Sed08g0184 Sed-Chr8:1019787 Sed08g0185 Sed-Chr8:1019787 8.70E-99 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39247 PF00010 HLH 0.00017 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0185 - - - 0.0