Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0187 ATGGTGGCCGCCATTTCCTTTTACAGAGGAAATCTCCACACAGTCCCTAATGTTCCCCGTCAATGGCGTACGCCCAACCACAACAACATCTCTGTTGCAGATTTCAAATCCCTTTTGCTCCGCCGTTCAAAAGCCCTCTCTCGCCGCCTCGCCGCCGTCTCTTCTTCTCCGGCCAACCTCTCTACTCCCCTGAACCCTAACCCTAACCCTAATCTCATTTCCGATTCTATAATCAAACCAGACGGCGAAGCATTCAGAAGTAACGAGTCTGCGCCGCCTGAGATTCCATTGGAAACTGAAAGGGTTAGTGTTGGTGGTGAAAGACCTTTTGCCGATGCCATTAGGGATGATTGTAATGGTTCTGATCCGGTGGAAAATGGTGGCGCGCATGTAAAAGATGGAAATCCTGCTGTTCTGGAAAACCCTAACTATGAGGCAAACAAGGAGGAGGATTTGTTAGATGACAAGGAGAACAGGAAAAAGGAAGTTGAGGAGAAGTTAAAAGTTTTGAATGAAAGAAAACATGGTCTTGTGCAAGTGTTGAAACAGATCTTGCATGTGGAAGAGGAATTAAAACGGCGTAGTAGTGTGCAAGGGACCGCAATTCGCCCTTCCACCCCTCTTCAAGTGGATGCTTCGGCTGATATGGGGTCAACCAGATTACTTGCTCCTAGGATAGGCTCAGAAGTGAATGCTATTGGAGATACTGAAGGTGGAGAAGCTGATGATCTTTTGAACCATAATGTTCTTTCTCGTCAAATGCTCCGGAACAATAGTATGTCGCCTTCTTCAGAGTCTTCTCTTAGACGGCCTGCCCAAATCTAA 825 46.91 MVAAISFYRGNLHTVPNVPRQWRTPNHNNISVADFKSLLLRRSKALSRRLAAVSSSPANLSTPLNPNPNPNLISDSIIKPDGEAFRSNESAPPEIPLETERVSVGGERPFADAIRDDCNGSDPVENGGAHVKDGNPAVLENPNYEANKEEDLLDDKENRKKEVEEKLKVLNERKHGLVQVLKQILHVEEELKRRSSVQGTAIRPSTPLQVDASADMGSTRLLAPRIGSEVNAIGDTEGGEADDLLNHNVLSRQMLRNNSMSPSSESSLRRPAQI 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1027025 1030278 - Sed0027580.2 Sed08g0187 721963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0187 274 Coils Coil 146 180 - -
Sed08g0187 274 MobiDBLite consensus disorder prediction 124 157 - -
Sed08g0187 274 MobiDBLite consensus disorder prediction 254 274 - -
Sed08g0187 274 PANTHER TRNA (ILE)-LYSIDINE SYNTHASE 4 100 - GO:0009507(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0187 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0187 Sed-Chr8:1027025 Sed12g1918 Sed-Chr12:30318176 1.10E-77 dispersed
Sed08g0186 Sed-Chr8:1027025 Sed08g0187 Sed-Chr8:1027025 4.10E-149 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g474 . . Bda06g00564 . . . . Bma12g01017 . . Cma10g00167 Cma11g00172 Car10g00156 Car11g00128 Sed08g0187 . Cpe04g01524 Bhi02g00372 Tan09g2177 Cmetu02g1628 . Hepe09g0152 . . Cla06g01621 Cam06g1800 Cec06g1850 Cco06g1857 Clacu06g1760 Cmu06g1704 Cre06g2522 Cone2ag0874 Cone16ag0136 . . . . . . . Blo15g00290 . . Bpe07g00806 . . . . Cmo10g00179 Cmo11g00136 . . . . . . . . . . . . . . . . . . . . Lsi06g01501 Csa01g00198 Chy02g02533 Cme02g01917
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007145 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 37