Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0189 ATGTCGCCAGATTCGATCCCCTGTAACCGATCTTCCACTGAGCCACTTTCCCACATCGAAAACCCCAACCCCATAACGGTTAACCATGACCTAATTGTCGAGAATGAGCCCACGACCACGACGAATAGTGAGCAACCCGCCTCGAGGAGGAGCCGGCCCTCTCGGGCTTGCACGGTTCGAGCTGCGGAGCGGCTCGTGGCAGCTCAGTCGGTGGTCGAGCGGAAGCCGAAGCCGAAACCGGAGCAGCCGAGCGAGGATTCGCCGCCGCTGCAGCAATGCAGCAGCAAGATCGTGACCCAGCTTGTTGAGGAGCCTTCGCCCTCACAGTTGCCGCGTTGGAGCCTGCGGTCCAAGTGGGAACTGGCGTCTGTACTTAATTTCTTGCATGTCTTTAGGGAGTTATTGAATATCCATAATGAATTCACGGTGGAAGAGTTTGAGACGGCCTTGATTACACCTAATGATACTTTGAGTGACATTCACATTCCGTTGCTAAAGGCGATTCCTCCTATTACAAGAATGGCCCTTACTCGGAATACGTGGGTGACTGTTATGTGCAGAAAATTGCGAGACTGGTGGCACTGGGTTGCTGAAGGGGATCTGCCTATTGTTGCCTCACATGGTGTTGAAATTGAAGTTTACAAAAATCTTGATCCTGGAATGCGTGTGGTTATCTTGAAAGCACTTTGTGACATTCGTGTTGAGCAAGAAGATATCCGGAGCTACATTGAAAATTCACTAAAACATGGAGTTCAACTTTCGGCATTTCGCAAAGAACGAATTGGTGGAGATTCACATGGAACTTATTTCTGGTATGAGGACGATCCCGTAATTGGTCAACGTTTGTACCGTGAGATTAGGAAAGTGGAGTTGAAAAAAGGCAAGGCCAAAGGTTCACAGGTCCTTCCTTGTACAACATACCAGTGGGAAACAGTTGCAACCAATTTTGATGAATTTCAAGATGTATCAGAAAAGCTTTTTACAAGTAACAGTCGTTCAGAGGCTTCACTTGGGAAAAAGTTGAAGAAGGACATGCTTCCTGAGATCGAGAAGGTTCACAAGAGAAAAGAAAAATTGCTGAAAAAACAGCATAGACAAGCACTTCTCTTGGATAATTTTGCACTTGTTGATGGGCTTGGTCCAGGACGCTCACTCCGTGACAGAAAACCTGTCACTTATACTTTTGATGATTATGACCGATCAATCAATGAGGCTATCAAGACAACCAAATTTAAGCCACCATCTCCAGAACTTAATCATGGAAGAGAAGCTGCTGTAAAGCTTGAACCTTCTACAAATGGAAAATGGAGTGGTCCATCTTATGCATCTCAAAACGCGAATTTCAGTGCGCTATCTCCCAAGTCGCCTGATTACGACGATGCTGATGAAGACCATATGTCCGAAGAGATTGATCGCAGACGGAGACAAAGGCCACAACGGTATTCCGGAGAGGATTACGTGGAAGCCTTATCGGATAATGATGCAGACTTTGGCAGTGATGACGACATAGTTGGTGAAGCTGTTTACGATGAGGAGTATCTACGAAAACGCAAGAAAAGAAGGAAAGCATCCAGCAGTTCCGAAGGAGATGAGGAGTATCACTATGAAGAGGAAAATGAGGAGGAAGAGGAGGAGGAGGAGGAAGACGAAGAAGAATCCTTGAGCATTAGTGAAGACAGTGACCGGCCACGAAAAGTGAAAAAAATGTCCGGGCGTACACGGAGGGAAACAAAGCTAAGGTCTCGTGGTGAGATTCAGTCAGGTCTGAGACGTAGTAAAAGGGCAAATCGAAGTCGAATAAATTATGGACAGTATGATGTATCAGAATCTGAACCAGAGAATAATAAAGTTAAGAAGACTAATGCCTCCGATGAGCACACAGATGCTAGAGAGAATGGGGATTATTCAGCTGATAGTCAAGGCTCTGACAATGACAATGAAGATGATGAAGAAGATGAGGACCAGGAAATGAAAGTTGATCAACCTGATGAAGTTTATGCAGAGAACATAGAGGCGCAAGACCCTCCTGAAAAACCGAATAGCCTAGAACAAGATGAAACTGAAGGTGCAAGAAAAACACAGTTTCTTGATCTAAATGAACTTGCTTCAGGCTCTGGTTTTGATGATGCTCCAACCACGGAAATGAAAGATGATACAGACGAGTTCTAG 2169 45.55 MSPDSIPCNRSSTEPLSHIENPNPITVNHDLIVENEPTTTTNSEQPASRRSRPSRACTVRAAERLVAAQSVVERKPKPKPEQPSEDSPPLQQCSSKIVTQLVEEPSPSQLPRWSLRSKWELASVLNFLHVFRELLNIHNEFTVEEFETALITPNDTLSDIHIPLLKAIPPITRMALTRNTWVTVMCRKLRDWWHWVAEGDLPIVASHGVEIEVYKNLDPGMRVVILKALCDIRVEQEDIRSYIENSLKHGVQLSAFRKERIGGDSHGTYFWYEDDPVIGQRLYREIRKVELKKGKAKGSQVLPCTTYQWETVATNFDEFQDVSEKLFTSNSRSEASLGKKLKKDMLPEIEKVHKRKEKLLKKQHRQALLLDNFALVDGLGPGRSLRDRKPVTYTFDDYDRSINEAIKTTKFKPPSPELNHGREAAVKLEPSTNGKWSGPSYASQNANFSALSPKSPDYDDADEDHMSEEIDRRRRQRPQRYSGEDYVEALSDNDADFGSDDDIVGEAVYDEEYLRKRKKRRKASSSSEGDEEYHYEEENEEEEEEEEEDEEESLSISEDSDRPRKVKKMSGRTRRETKLRSRGEIQSGLRRSKRANRSRINYGQYDVSESEPENNKVKKTNASDEHTDARENGDYSADSQGSDNDNEDDEEDEDQEMKVDQPDEVYAENIEAQDPPEKPNSLEQDETEGARKTQFLDLNELASGSGFDDAPTTEMKDDTDEF 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1034169 1039714 - Sed0005992.1 Sed08g0189 721965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0189 722 MobiDBLite consensus disorder prediction 576 591 - -
Sed08g0189 722 Coils Coil 532 559 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 641 659 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 489 507 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 433 452 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 611 633 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 508 530 - -
Sed08g0189 722 PANTHER REMODELING AND SPACING FACTOR 1 102 714 IPR028938 GO:0006355(InterPro)|GO:0031213(InterPro)
Sed08g0189 722 MobiDBLite consensus disorder prediction 456 482 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 68 93 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 32 52 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 1 24 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 1 56 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 531 556 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 427 722 - -
Sed08g0189 722 MobiDBLite consensus disorder prediction 678 693 - -
Sed08g0189 722 Pfam DDT domain 123 168 IPR018501 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0189 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0189 Sed-Chr8:1034169 Sed12g1921 Sed-Chr12:30326019 0.00E+00 dispersed
Sed12g1920 Sed-Chr12:30326019 Sed08g0189 Sed-Chr8:1034169 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g478 . . Bda06g00560 Bda15g00584 Bpe12g00564 . . Bma12g01014 . . Cma10g00169 Cma11g00171 Car10g00158 Car11g00129 Sed08g0189 . Cpe04g01523 Bhi02g00367 Tan09g2175 Cmetu02g1218 . . . . Cla06g01619 Cam06g1798 Cec06g1848 Cco06g1856 Clacu06g1758 Cmu06g1702 Cre06g2520 Cone2ag0872 Cone16ag0138 . . . . . . Blo13g00029 Blo15g00292 . . Bpe07g00803 . . Bma08g00199 . Cmo10g00181 Cmo11g00137 . . . . . Cpe18g00813 . . . . . . . . . . . . . . Lsi06g01499 Csa01g00200 Chy02g02531 Cme02g01915
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003679 3 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39249 PF02791 DDT 6.20E-09 No_clan Sed TR