Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0190 ATGGAATCTTCTTCGGTGAACAACAGATGGATGGCTACAGTGGCCAGCATTTGGATCCAATGTATTTGCGGCCCATCCTACACCTTCGGGATCTACTCCGCCGCCCTCAAATCCACCCAAAACTACGACCAATCCACTCTCGACACCGTCTCCGTCTTCAAAGACATCGGCGCCACCGCCGGAACCCTCGCCGGACTCCTCTACTCCGCCGTCGTCTCCCCCGCCCACCCCCGCCGCCCCTGGATCGTCCTCGCCGTCGGGGCGGTTCAGTGCTGCCTCGGTTACCTCTTCATCTGGGCCGCCGTCTCCGGCCTGATCCCCCGGCCGCCGGTGCCGGCGATGTGCTTCTTCATGTTCTTGGCCGTTCATGCCCAAGTCTTCTTCAACACCGCCAATGTCGTCACCGGCGTCCATAATTTCCAGCTATACGGCGGCACCATCCTCGGCATTCTTAAGGGATTTCTGGGTCTAAGTGGAGCAGTACTAATTCAATTCGGCAACACTTTGTGCAATCGAGACCCAGTTGATTTTCTTCTCATGCTCGCAATTTTACCGGCAATTACCACAATTCTGCTGATGAAATTCGTCGTAATCGACAAAACAGAGACCGGAAACGAAGCCACCCATTTAAATTCCTTCACATCAATCGCTTTAACAATCTCTTTATACCTCACAATTCTCATCATTTTCGACAATTCCTTCATTTTCCCAACATGGGTTCGAATTTTCTCCTTCATTCTACTCCTAATCCTGATCGCTTCCCCTCTCGGAATCGCAATCAGAGCCAAAACAGAGGACTCTGTTTTTCCGGCCAAGCTTGAGAACGGCGGCGATTCCTTTGATTACCGTGAAATTTCCGGCGAGGAACCGAGCCGGGATCTGGAAGTGATTGTTTCGGATCGGGAAATCGGTTTGATTGAGGCTACTGGGACTGTGGATTTCTGGGTTTTGTTTTTTTCGATAATGTGTTCTATGGGTTCTGGTTTGGCCACCATTAACAATATGAACCAACTTGGTCAATCTCTTGGCTATGGATCTGTGGAGATTAATACGTTGGTTTCTCTTTGGAGCATTTGGAGTTTCCTTGGCCGACTTGGTGCAGGTTACATTTCTGATATTCTCCTAAGCAAACTAGGCTGGGCAAGGCCATTATTGATGGCCATAACTTTGGCAACAATGAGCTTAGGCCATATCATCATAGCTTCAGGATTCAGAGGAAATCTATACATAGGATCAGTGATTGTGGGGATTTGTTATGGAGCTCAAATCTCATTGATGCCTGCAATTACAGCTGAGATATTTGGGATTAAACATATGGGCACCATTTACAACACCATCAATGTTGCCTGTCCCATTGGATCTTATATTCTGTCTGTTAAAATTATTGGCTTTATTTATGACACACAAGCAGCCTCCTCTGAAGACAATTCCTGCTCCGGCAAACACTGTTTTATGTCGTCGTTTCTCATCGTCGCGGTGGCCGATTTATTCGGGTTTGTGATTGCTGTTGTTCTGTTCTTTCGAACCCGGAGATTTTATCAGCTTCTTGTGCAGAGAAGACTCAAAGCTTGA 1572 48.03 MESSSVNNRWMATVASIWIQCICGPSYTFGIYSAALKSTQNYDQSTLDTVSVFKDIGATAGTLAGLLYSAVVSPAHPRRPWIVLAVGAVQCCLGYLFIWAAVSGLIPRPPVPAMCFFMFLAVHAQVFFNTANVVTGVHNFQLYGGTILGILKGFLGLSGAVLIQFGNTLCNRDPVDFLLMLAILPAITTILLMKFVVIDKTETGNEATHLNSFTSIALTISLYLTILIIFDNSFIFPTWVRIFSFILLLILIASPLGIAIRAKTEDSVFPAKLENGGDSFDYREISGEEPSRDLEVIVSDREIGLIEATGTVDFWVLFFSIMCSMGSGLATINNMNQLGQSLGYGSVEINTLVSLWSIWSFLGRLGAGYISDILLSKLGWARPLLMAITLATMSLGHIIIASGFRGNLYIGSVIVGICYGAQISLMPAITAEIFGIKHMGTIYNTINVACPIGSYILSVKIIGFIYDTQAASSEDNSCSGKHCFMSSFLIVAVADLFGFVIAVVLFFRTRRFYQLLVQRRLKA 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1047004 1051147 - Sed0011587.1 Sed08g0190 721966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0190 523 CDD MFS_Mch1p_like 9 498 - -
Sed08g0190 523 Gene3D MFS general substrate transporter like domains 311 511 IPR036259 -
Sed08g0190 523 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 513 - GO:0016020(PANTHER)
Sed08g0190 523 Pfam Major Facilitator Superfamily 317 511 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Sed08g0190 523 SUPERFAMILY MFS general substrate transporter 211 511 IPR036259 -
Sed08g0190 523 Pfam Nodulin-like 9 259 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0190 Sed-Chr8:1047004 Sed11g1188 Sed-Chr11:27731790 8.80E-76 dispersed
Sed10g1002 Sed-Chr10:8679342 Sed08g0190 Sed-Chr8:1047004 7.00E-41 transposed
Sed12g1922 Sed-Chr12:30358727 Sed08g0190 Sed-Chr8:1047004 2.60E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0190 - - - 0.0