Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0191 ATGAAAAGGCGAGGCGAAGCACAAGAAGGCACGTGGAGAGCACGTGCGAAGGCGTTTGGACACGCGCACGCAGCCAAATCTCTCCAATTCCGATGCCAAATCTCTCTTTCATGGGAGTACCCAATTTCGCCGTCGCCGCCGCGTTTTATGGACGGAAAACAGGATCATGAGCCGCCGCCCACGACGGCGGATCCGGCGGATCAATTCCACTCAATTTCTCTGGCCGACGCTCCTGTTCTGCTTCTTGTTAAATTCCACACAGCGCTGCGATCGGAGCTCGCGGATTTGCGGCGCGTGACGGTAGCCGCGGCGGAGAGAGGCGGTTACGGCGGCGAATTTGTCGCCGGATTGATTAGGAGAATTGAGTTTCTGAAACTTGCTTGTAAGTATCACTGCGCTGCCGAAGATGAGATTGTATTCCCAGCTCTTGATCTACACACAAAAAATGTAGTGCCCACTTATTCTCTAGAGCATGAGAGCATAGATGGCTTATTCACTTCAATTTTTGAACATTGTGAAAACATCAATGGAGATAACAAAGATATCTCCAAGCCATTTCAGGAACTGGTCTTCTGTTTGGGCACCATTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTGTTTCCATTGCTGATGAAGCAATTCTCAGCAAGAGAGCAGGCGTCGCTCGTGTGGCGATTCATTTGCAGCGTGCCGATGATACTATTGGAGGAGTTTCTGCCATGGATGATGTCTTTTCTTTCACCAGAGGAGCAACTAGAAGTTGTAAGTTGCATGAAATATGTAGTGCCCGACGAGAAACTACTGCAAGAGGTGATAGTGTCTTGGCTTGGAAGCCATGGAAAAACTTGCAGAGATTTAGAGGCAGAGGATATTAAGTGTGTTTCCAATTTGCTTTCATTTCATGAAAGTGGACAAAGCCCTGTTGATAGCCTTCACCTTTGGCATGGTGCCATTATGAAGGATCTTAAGGAAGTTCTAAAATGTCTTTTTCAAGTGAAGAGTTGCACTACAACAACAGCACTTTCTGACCTTGATTCCATAGTTGTTCAAATAAAGTTCCTTGCTGATGTAATTCTTTTCTATAGAAAGGCATCGGAGAAGTTCTTTCGTCCTGTGCTCAATCAACATTCCGACGTCTGCCTCATCGCCTTCGACCAATCAATTCTTAATGATAGTCACATTGAAGGCTTACAACGGTTGTTGCAGCATGGTGCACAAGATACTATACCATTGAGCAATTTTTTGGAAAAATTGTGTTGGGATATGGAGTCGTTTATTGTACGAATCAGCAAGCACTTCACTTTTCAAGAAACTAAGGTGCTTCCAGTGATTAGAAAGAGTTGTAGCCATAAAACACAGCAACAACTTTTGTACGCGAGCCTCCGTACCTTGCCACTCGGGCTCTTGAAGTGTATAATTACTTGGTTTTCAGCTCATTTATCTGAGGAAGAATTGAGCTTTATATTTCAAACAAAGTCACACGGAGTTTTTCGGGTCAATGATGCACTTGTTTCCCTCTTACACGAGTGGTTTCGAATAGGCTACTCGGGCAAGACTTCGGTTGAACAATTTGGCCAAGATTTGCAGAAAGTTTTCCAGACCAGAAGCTACATTTTGCATGAAAAGGTTGAGCAAATAAAAGAAGTTGTTGGAACTTCATCCTTGAGTTCAAATGTTCAATCTAATAAAGGGTCAAACTCTGAGCAAATGGGATTAGTTTCTACCAACAAGAACAAGAGCTTCATGTCGAATTCTCCGCCCGGTGTTTCTTGCACTGGTTCATTATACATTTTCCAGGGACGCCCGCATTCTGCTTTTAATCAGCCAATGCCAATAGACCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAGGAATTGGATTACTTTGTTCTTGGTTCAGCTAAGCTTGTCGAACATGTTGGAATCTTGGCAGAGTTTATAAGGCGATTCAAATTGGTTAAGTATTTATATCAAATCCATACAGATGCTGAGGACAAGATTGCTTTTCCAGCTTTGGAGAAGAAGAGAACTTTCCAAAACATTAGCTTTTCCTACACCATTGATCACAAACTGGAAGTACATCAATTCAGTAAAATATCCTTCATTCTTAATGAAATGTCTGAATTGCACACTTCAATTTCTTATGTCAATGCCAATAGAAAAATGTGTAGTCACCGGCAGCTCTGTCTGGAACTTCATGATATGTGCAAGTCTCTGCATAAGTCAGTCTCTGACCACGTCGATCGGGAAGAAATTGAGCTTTGGCCCTTGTTTAGGAATTGTTTCACTGTTGAAGAGCAGGAACAACTTATTGGAGCAATATTTGGGAGAACAAAAGCTGAAATATTGCAAGATATGCTACCTTGGCAAATGACATATTTGTCACCAAATCATCAACATGACATGATGTCTATGTTCCACAAGGTAACAAGACATACCATGTTTAATGAATGGTTAAAAGAATGGTGGGAAGATTATGATCAAGAGAATGTGGTAGCTGAGGTGACAACTATTAGTGTTACTCCCTCATTGACTATGGATCCCTTGGAAATCATCTCAAAATATCTATCCAAAGAAGTAACTGAAGTGTGTGAGGATAATATTTTTGGGACAAGCTTCAGCTCAGCACCGAAGGAACTTCGAGGTCATGTTGCCGATGTCGAAAAGACAGAAATGTTCAACTTGAATGATGAAACAAAAGATTTTAGTGGCAGCCAACATAATGAAGCATTTGAAGAATGTCCAAAAGTCATTTCTCATGGTGTTGGGGATATGGACGCTGATGTTATTACAGAACATGTGACTGAAATGGAGCGGCCTGAAGAAGGTAAGAAATCGAGCCAACACGATCATGTTCTTACAATTAGTCAAGAAGATCTGGAGGTGGTAATAAGAAGGGTATCTAGAGACTCGTCCTTAGACTCGAAAAGCAAATCCTATTTGATACAAAATTTGCTGATGAGTCGTTGGATTGCAAAGCACCAAGGTTCCCAATTAGAGACAAATGCCACTACAGATACTCAAGGATTTTCAAATCAGTATCCATCTTATAGGGATTCCATGGAGAAAGAATTTGGTTGCAAACATTACAAAAGAAACTGCAAACTTCTAGCTCCATGTTGCAACCAACTATATACATGCTTACATTGTCACGACGAGGTTACCGATCACTCATTGGATAGAAAATCCATCACAAAGATGATGTGCATGAACTGCTTAGTAGTTCAGCCTATTGGCAGGACATGCTCAACTGTCTCTTGTGGTAATTTATCCATGGGGAAGTACTTCTGCAAGATCTGCAAACTATTCGACGATTCGAGAGATATCTACCACTGTCCATATTGTAACCTATGCCGAGTGGGGAAGGGTTTGGGCATCGACTACTTCCATTGTATGAACTGCAATGGTTGTATGAATCGCCAACTTTCGAATCATGTATGCAGAGAGAAGTGCCTCGAAGACAACTGCCCAATTTGCCATGAAGACATTTTTACATCCACTATTCCAGCCAAGTCTCTTCCATGTGGTCATTTAATGCATTCAACATGCTTTCAGGAGTACACCTACACTCATTACACCTGCCCTATATGCAGCAAGTCGCTGGGAGACATGCAGGTGTACTTTGAGATGCTGGATGCATTATTGGCTGAAGAGAAAATACCAGATGAGTATTCAGGGAAAACTCAGGTTATATTGTGTAATGATTGTGAGAAGCATGGAATAGCACAATTCCACTGGTTGTATCATAAATGTCCTTGTTGTGGTTCATATAATACTAGGGTTTTGTAA 3804 41.88 MKRRGEAQEGTWRARAKAFGHAHAAKSLQFRCQISLSWEYPISPSPPRFMDGKQDHEPPPTTADPADQFHSISLADAPVLLLVKFHTALRSELADLRRVTVAAAERGGYGGEFVAGLIRRIEFLKLACKYHCAAEDEIVFPALDLHTKNVVPTYSLEHESIDGLFTSIFEHCENINGDNKDISKPFQELVFCLGTIQTTICQHMIKEEQQVFPLLMKQFSAREQASLVWRFICSVPMILLEEFLPWMMSFLSPEEQLEVVSCMKYVVPDEKLLQEVIVSWLGSHGKTCRDLEAEDIKCVSNLLSFHESGQSPVDSLHLWHGAIMKDLKEVLKCLFQVKSCTTTTALSDLDSIVVQIKFLADVILFYRKASEKFFRPVLNQHSDVCLIAFDQSILNDSHIEGLQRLLQHGAQDTIPLSNFLEKLCWDMESFIVRISKHFTFQETKVLPVIRKSCSHKTQQQLLYASLRTLPLGLLKCIITWFSAHLSEEELSFIFQTKSHGVFRVNDALVSLLHEWFRIGYSGKTSVEQFGQDLQKVFQTRSYILHEKVEQIKEVVGTSSLSSNVQSNKGSNSEQMGLVSTNKNKSFMSNSPPGVSCTGSLYIFQGRPHSAFNQPMPIDLIFFFHKALKKELDYFVLGSAKLVEHVGILAEFIRRFKLVKYLYQIHTDAEDKIAFPALEKKRTFQNISFSYTIDHKLEVHQFSKISFILNEMSELHTSISYVNANRKMCSHRQLCLELHDMCKSLHKSVSDHVDREEIELWPLFRNCFTVEEQEQLIGAIFGRTKAEILQDMLPWQMTYLSPNHQHDMMSMFHKVTRHTMFNEWLKEWWEDYDQENVVAEVTTISVTPSLTMDPLEIISKYLSKEVTEVCEDNIFGTSFSSAPKELRGHVADVEKTEMFNLNDETKDFSGSQHNEAFEECPKVISHGVGDMDADVITEHVTEMERPEEGKKSSQHDHVLTISQEDLEVVIRRVSRDSSLDSKSKSYLIQNLLMSRWIAKHQGSQLETNATTDTQGFSNQYPSYRDSMEKEFGCKHYKRNCKLLAPCCNQLYTCLHCHDEVTDHSLDRKSITKMMCMNCLVVQPIGRTCSTVSCGNLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNGCMNRQLSNHVCREKCLEDNCPICHEDIFTSTIPAKSLPCGHLMHSTCFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPDEYSGKTQVILCNDCEKHGIAQFHWLYHKCPCCGSYNTRVL 1267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1052144 1063205 + Sed0007985.1 Sed08g0191 721967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0191 1267 CDD RING-H2_Pirh2-like 1160 1203 - -
Sed08g0191 1267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 650 1266 - -
Sed08g0191 1267 SMART ring_2 1161 1202 IPR001841 -
Sed08g0191 1267 FunFam Zinc finger protein-related isoform 1 1156 1205 - -
Sed08g0191 1267 SUPERFAMILY Zinc hairpin stack 1098 1153 IPR037275 -
Sed08g0191 1267 Pfam Hemerythrin HHE cation binding domain 81 215 IPR012312 -
Sed08g0191 1267 Pfam CHY zinc finger 1032 1100 IPR008913 GO:0008270(InterPro)
Sed08g0191 1267 CDD Hr-like 81 213 - -
Sed08g0191 1267 Pfam Zinc-ribbon 1208 1265 IPR039512 -
Sed08g0191 1267 Gene3D nmb1532 protein domain like 612 782 - -
Sed08g0191 1267 Gene3D nmb1532 protein domain like 80 233 - -
Sed08g0191 1267 ProSiteProfiles Zinc finger RING-type profile. 1161 1203 IPR001841 -
Sed08g0191 1267 Pfam Ring finger domain 1159 1202 IPR001841 -
Sed08g0191 1267 SUPERFAMILY RING/U-box 1160 1210 - -
Sed08g0191 1267 ProSiteProfiles Zinc finger CTCHY-type profile. 1097 1160 IPR017921 -
Sed08g0191 1267 SUPERFAMILY CHY zinc finger-like 1023 1088 IPR037274 GO:0008270(InterPro)
Sed08g0191 1267 ProSiteProfiles Zinc finger CHY-type profile. 1025 1094 IPR008913 GO:0008270(InterPro)
Sed08g0191 1267 MobiDBLite consensus disorder prediction 47 67 - -
Sed08g0191 1267 CDD Hr-like 618 761 - -
Sed08g0191 1267 Gene3D - 1232 1267 - -
Sed08g0191 1267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1154 1205 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0191 K16276 - - csv:101212459 2001.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0191 Sed-Chr8:1052144 Sed12g2088 Sed-Chr12:31605791 8.80E-231 dispersed
Sed12g1923 Sed-Chr12:30380791 Sed08g0191 Sed-Chr8:1052144 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g483 . . . . . . . . . . Cma10g00305 . Car10g00290 . Sed08g0191 . . Bhi02g00363 Tan09g2172 Cmetu02g1853 . Hepe09g0145 . . . . . . . . . . . Cone13ag0096 Cone19ag0099 . . . . . Blo15g00295 . . Bpe07g00800 . . . . Cmo10g00326 . . . . . . Cpe18g00810 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34