Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g0192 | ATGGAAGAGAAAGGTGAAAAACCTGAGGTTTTGGAGGCTGTGTTGAAGGAAACTGTGGACTTGGAAAATATACCCATTGAGGAGGTTTTTGATAATCTGAGATGTAGTAAAGAGGGTCTTACCACAGCGGCTGCTGAGGAGCGGCTTGTAATTTTCGGTCACAACAAGCTCGAGGAGAAGAAGGAAAGTAAAATCTTGAAATTTTTAGGATTTATGTGGAATCCCCTCTCGTGGGTGATGGAAGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGCGGAGGAAAGCCTCCGGATTGGCAAGATTTTGTTGGTATTATCTGCCTGTTGCTCATCAACTCAACCATAAGTTTTATTGAGGAAAACAATGCCGGTAACGCTGCAGCTGCTTTAATGGCCAGTTTAGCTCCCCAAGCCAAGATTCTTAGAGATGGAAGGTGGGGTGTGCAAGATGCTGCAGTTTTAGTTCCTGGCGATATTATAAGTATCAAACTTGGGGATATAATTCCTGCTGATGCTCGTCTTCTGGAGGGAGATCCGTTAAAAATTGATCAGTCTGCTCTTACAGGCGAGTCTCTTCCTGTTACGAAAGGTCCTGGTGATGGCATATACTCTGGTTCTACTTGTAAACAAGGAGAGATTGAAGCTGTGGTCATTGCCACTGGTGTTCATACTTTCTTTGGCAAGGCTGCTCACCTTGTTGACACTACTAATCAAGTGGGCCACTTCCAAAAGGTCTTAACTGCTATAGGGAATTTCTGCATATGTTCAATTGCTGTGGGGATGGTTACAGAAATTATTGTAATGTACCCAATTCAAGATCGGGATTATCGTCCTGGAATCGACAATCTTCTTGTGCTTCTGATTGGAGGAATTCCAATTGCCATGCCCACAGTCCTCTCTGTGACAATGGCCATTGGCTCTCATAGGTTATCTCAGCAGGGTGCTATCACAAAGAGAATGACTGCAATTGAAGAGATGGCAGGTATGGATGTGCTTTGCAGTGACAAGACTGGAACACTGACATTAAACAAGCTAACTGTTGACAAAAATCTTGTTGAGGTTTTTGTTAAAGGAGTGGATGCAGATACTGTGGTTCTAATGGCAGCCCGGGCATCAAGAACAGAGAACCAAGACGCCATCGATACTGCTATTGTTGGGATGCTTGCTGATCCAAAAGAGGCTCGTGCTGGTATTCAAGAAGTACACTTCCTTCCATTTAACCCTACTGATAAGCGGACTGCATTGACTTACATAGATCATGAAGGTAAAATGCATAGAGTCAGCAAAGGTGCACCAGAGCAGATTCTGAACCTTGCTCACAATAAGTCGGAGATTGAGCGTAGAGTTCATGCTGTGATTGACAAATTTGCAGAGCGAGGTTTACGCTCTCTTGCTGTGGCATACCAGGAAGTTCCAGATGGTACGAAAGAAAGTGCTGGAGGTCCATGGCAGTTTGTTGGCCTTCTGCCACTGTTCGATCCACCAAGGCATGATAGTGCTGAAACAATAAGGAGGGCCTTAAATCTTGGAGTGAATGTGAAAATGATTACTGGTGACCAACTGGCCATAGGAAAGGAAACAGGGCGTCGCTTGGGGATGGGAACCAACATGTATCCCTCATCTGCCTTATTAGGTCAGAACAAGGACGAATCGATTGCTGCTTTACCTGTTGATGAACTGATTGAAAAAGCTGATGGCTTTGCGGGTGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGCCTGCAGGCGAGGAAACATATCTGTGGGATGACTGGCGATGGAGTAAATGATGCACCAGCTCTTAAAAAAGCAGACATCGGCATAGCTGTTGCTGATGCTACTGATGCTGCTCGTAGTGCTTCGGACATAGTCCTTACCGAGCCCGGTCTGAGTGTTATCATTAGTGCTGTTTTGACCAGCCGTGCAATCTTTCAGAGGATGAAAAATTACACTATATATGCAGTTTCAATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAGATTTGACTTCCCACCTTTTATGGTGCTTATTATTGCCATTCTCAATGATGGTACGATAATGACGATATCGAAGGATAGAGTGAAACCATCTCCTTTGCCTGATAGCTGGAAGCTGGCGGAAATTTTTACAACTGGGATTATACTTGGTGGCTACTTGGCAATGATGACTGTGATCTTCTTTTGGGCAGCCTATAAAACAGACTTCTTTCCACGAATCTTTGGGGTGGCAACGCTCGAGAAAACTGCACACGATGACATTCGGAAGCTTGCCTCAGCAGTATATCTGCAAGTAAGCACTATAAGTCAGGCTCTCATATTTGTTACACGCTCGCGAAGTTGGTCGTATGTGGAACGCCCTGGTTTACTATTGGTTGCAGCTTTTATAGTTGCACAGCTGATTGCTACTTTAATTGCGGTTTATGCAAATTGGAGCTTTGCTGCCATTGAAGGAATTGGATGGGGTTGGGCTGGTGTTATCTGGCTTTACAACATCATCTTTTACATCCCACTTGATATCGTAAAGTTCATCACAAGATATGCCTTGAGTGGGAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCCTTTACGAGGCAAAAGGACTTCGGGAAGGAACAACGAGAGCTACAATGGGCTCATGCACAAAGAACATTACATGGATTACAAGCACCCGACGCCAAGATGTTCCATGACCGAACTCACTTCACCGAGCTCAATCAGATGGCAGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGAGGGAACTACACACCCTGAAGGGCCATGTTGAATCAGTGGTGAGGCTGAAAGGACTTGACATTGACACAATTCAGCAATCTTACACTGTGTGA | 2880 | 44.62 | MEEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIICLLLINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWGVQDAAVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMVTEIIVMYPIQDRDYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFVKGVDADTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPDGTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWRFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPRIFGVATLEKTAHDDIRKLASAVYLQVSTISQALIFVTRSRSWSYVERPGLLLVAAFIVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDIVKFITRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHDRTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQSYTV | 959 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 1079970 | 1088302 | + | Sed0024100.1 | Sed08g0192 | 721968 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g0192 | 959 | Gene3D | - | 137 | 221 | - | - | |
| Sed08g0192 | 959 | FunFam | Plasma membrane ATPase | 137 | 221 | - | - | |
| Sed08g0192 | 959 | SUPERFAMILY | Calcium ATPase, transduction domain A | 137 | 234 | IPR008250 | - | |
| Sed08g0192 | 959 | Pfam | Cation transporter/ATPase, N-terminus | 23 | 86 | IPR004014 | - | |
| Sed08g0192 | 959 | FunFam | Plasma membrane ATPase | 346 | 493 | - | - | |
| Sed08g0192 | 959 | Coils | Coil | 910 | 930 | - | - | |
| Sed08g0192 | 959 | Pfam | haloacid dehalogenase-like hydrolase | 330 | 607 | - | - | |
| Sed08g0192 | 959 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 22 | 907 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Sed08g0192 | 959 | SFLD | p-type atpase | 316 | 644 | IPR044492 | - | |
| Sed08g0192 | 959 | Gene3D | - | 331 | 630 | IPR023214 | - | |
| Sed08g0192 | 959 | Gene3D | - | 346 | 493 | IPR023299 | GO:0000166(InterPro) | |
| Sed08g0192 | 959 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 39 | 815 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed08g0192 | 959 | SMART | Cation_ATPase_N_a_2 | 20 | 92 | IPR004014 | - | |
| Sed08g0192 | 959 | NCBIfam | HAD-IC family P-type ATPase | 568 | 682 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g0192 | 959 | NCBIfam | HAD-IC family P-type ATPase | 106 | 541 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g0192 | 959 | Pfam | E1-E2 ATPase | 135 | 313 | - | - | |
| Sed08g0192 | 959 | CDD | P-type_ATPase_H | 39 | 850 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed08g0192 | 959 | PRINTS | H+-transporting ATPase (proton pump) signature | 593 | 609 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g0192 | 959 | PRINTS | H+-transporting ATPase (proton pump) signature | 624 | 649 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g0192 | 959 | PRINTS | H+-transporting ATPase (proton pump) signature | 450 | 468 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g0192 | 959 | PRINTS | H+-transporting ATPase (proton pump) signature | 565 | 581 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g0192 | 959 | PRINTS | H+-transporting ATPase (proton pump) signature | 769 | 790 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed08g0192 | 959 | Gene3D | - | 99 | 824 | - | - | |
| Sed08g0192 | 959 | SFLD | Haloacid Dehalogenase | 316 | 644 | - | - | |
| Sed08g0192 | 959 | FunFam | ATPase 4 plasma membrane-type | 578 | 824 | - | - | |
| Sed08g0192 | 959 | Gene3D | - | 908 | 959 | - | - | |
| Sed08g0192 | 959 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 336 | 342 | IPR018303 | - | |
| Sed08g0192 | 959 | PRINTS | P-type cation-transporting ATPase superfamily signature | 334 | 348 | - | - | |
| Sed08g0192 | 959 | PRINTS | P-type cation-transporting ATPase superfamily signature | 593 | 612 | - | - | |
| Sed08g0192 | 959 | PRINTS | P-type cation-transporting ATPase superfamily signature | 616 | 628 | - | - | |
| Sed08g0192 | 959 | PRINTS | P-type cation-transporting ATPase superfamily signature | 510 | 520 | - | - | |
| Sed08g0192 | 959 | PRINTS | P-type cation-transporting ATPase superfamily signature | 488 | 499 | - | - | |
| Sed08g0192 | 959 | PRINTS | P-type cation-transporting ATPase superfamily signature | 184 | 198 | - | - | |
| Sed08g0192 | 959 | FunFam | Plasma membrane ATPase | 486 | 641 | - | - | |
| Sed08g0192 | 959 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 20 | 856 | IPR023298 | - | |
| Sed08g0192 | 959 | SUPERFAMILY | HAD-like | 330 | 640 | IPR036412 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g1839 | Sed-Chr1:13525684 | Sed08g0192 | Sed-Chr8:1079970 | 0.00E+00 | dispersed | |
| Sed08g0192 | Sed-Chr8:1079970 | Sed08g0194 | Sed-Chr8:1079970 | 0.00E+00 | dispersed | |
| Sed08g0192 | Sed-Chr8:1079970 | Sed08g0193 | Sed-Chr8:1079970 | 0.00E+00 | tandem | |
| Sed11g1984 | Sed-Chr11:34039862 | Sed08g0192 | Sed-Chr8:1079970 | 0.00E+00 | wgd | |
| Sed08g0192 | Sed-Chr8:1079970 | Sed08g2568 | Sed-Chr8:38206175 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g0192 | K01535 | - | csv:101217264 | 1791.16 |